PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1NG378700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 300aa MW: 31212 Da PI: 5.7465 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.7 | 1.5e-18 | 148 | 198 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp ng +r++lg++++ae+Aa a+++a+ +++g Pavir.1NG378700.1.p 148 HYRGVRQRP-WGKFAAEIRDPARNG--ARVWLGTYDSAEDAAVAYDRAAYRMRG 198 8********.**********97676..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.57E-28 | 147 | 206 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.6E-31 | 147 | 206 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.1E-37 | 148 | 212 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-12 | 148 | 198 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.12E-23 | 148 | 208 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.026 | 148 | 206 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.0E-13 | 149 | 160 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.0E-13 | 188 | 208 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MLLNPACEAA SLDSIRHHLL DEPPAASASA GPRPVYCRST SFGSLVADQW SESLPFRPDD 60 ADDMVVFGAL WDAFSRGWLP DGSFAAVKPE PPASPDSPYE FGSCLGGRLL LASPEDEELP 120 KTPTAEAASA AMTPGGGEEA AAVGRGKHYR GVRQRPWGKF AAEIRDPARN GARVWLGTYD 180 SAEDAAVAYD RAAYRMRGSR ALLNFPLRIG SEIAAAAAAA ATAPAVGEKR PSPEPPASSD 240 SSSPSTSSSS SGTPKRRKRG EAAAATMAMA LVPPAQPPVQ LPLPAHPWFA AGPVQQLVS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-37 | 145 | 211 | 2 | 68 | ATERF1 |
3gcc_A | 2e-37 | 145 | 211 | 2 | 68 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.169 | 8e-78 | callus| leaf| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1NG378700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727714 | 1e-145 | KJ727714.1 Zea mays clone pUT5653 AP2-EREBP transcription factor (EREB195) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004953322.1 | 1e-144 | ethylene-responsive transcription factor 2 | ||||
TrEMBL | A0A3L6RT38 | 1e-154 | A0A3L6RT38_PANMI; Ethylene-responsive transcription factor 2 | ||||
STRING | Pavir.Aa01184.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3800 | 29 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17500.1 | 2e-37 | ethylene responsive element binding factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1NG378700.1.p |