PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1NG372900.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | DBB | ||||||||
Protein Properties | Length: 204aa MW: 21334 Da PI: 5.0349 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.2 | 5.9e-07 | 4 | 43 | 5 | 38 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ + + ++ fC ++ lC+ C H+ H+ Pavir.1NG372900.3.p 4 QCDVCAAEAASVFCCADEAALCAACDRRVHRAnklagkHR 43 7*****************************7677777776 PP | |||||||
2 | zf-B_box | 29.6 | 1.5e-09 | 64 | 105 | 3 | 38 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 ++ C+ ++ek+ lfC++++ lC+dC ++ H Ht Pavir.1NG372900.3.p 64 PPLCDICQEKRGLLFCKEDRAILCRDCDVSVHMAselamrHT 105 689***************************994455666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.926 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.2E-10 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.22E-5 | 3 | 47 | No hit | No description |
Pfam | PF00643 | 9.0E-6 | 4 | 44 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.1E-13 | 62 | 109 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.139 | 62 | 109 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 8.1E-8 | 63 | 105 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.12E-6 | 66 | 95 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MKVQCDVCAA EAASVFCCAD EAALCAACDR RVHRANKLAG KHRRFSLLGP APPSSSPGQQ 60 QQPPPLCDIC QEKRGLLFCK EDRAILCRDC DVSVHMASEL AMRHTRFLLT GVRLSAEPAT 120 CPSPPSDENS SDSLCCSAGG AAPPPAPATS HGSDSSSISE YLTKTLPGWH VEDFLVDEAA 180 AAAAANIAVS ADASYQVGCR DDE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1NG372900.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU968715 | 1e-140 | EU968715.1 Zea mays clone 323650 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025792349.1 | 4e-95 | B-box zinc finger protein 20-like | ||||
Swissprot | Q9LQZ7 | 4e-54 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | A0A3L6QKL3 | 4e-98 | A0A3L6QKL3_PANMI; B-box zinc finger protein 20-like | ||||
STRING | Pavir.Aa01111.1.p | 1e-102 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 7e-36 | salt tolerance homolog2 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1NG372900.3.p |