PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1NG370400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | YABBY | ||||||||
Protein Properties | Length: 260aa MW: 27287.2 Da PI: 8.0253 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 211.6 | 2.6e-65 | 18 | 216 | 5 | 170 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee........................ 70 s +eq+Cyv+Cn C+tilav vP +slfk+vtvrCGhC++llsvnl+ aa + s+ Pavir.1NG370400.1.p 18 SPTEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPPAAPPANQLSFGGGgghsllsptsphglldefalqtps 107 578********************************************9996666555545555444557889999999*99999875444 PP YABBY 71 .lleelkveeenlksnvekeesastsvssekl...........senedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdi 147 l+ ++ ++ sn+++ +s+s+s +s++l + +++ e+p+ p v+rPPekrqrvPsaynrfik+eiqrika+nPdi Pavir.1NG370400.1.p 108 lLM----DQASANLSNTITGRSNSSSCASNNLpaappmpaakpPVQQEPEIPKSAPsVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDI 193 322....222222234444444455555555555666788888899999***98777********************************* PP YABBY 148 shreafsaaaknWahfPkihfgl 170 +hreafsaaaknWahfP+ihfgl Pavir.1NG370400.1.p 194 THREAFSAAAKNWAHFPHIHFGL 216 *********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 3.1E-69 | 19 | 216 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 8.12E-8 | 155 | 209 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 3.5E-4 | 165 | 208 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0009933 | Biological Process | meristem structural organization | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0010159 | Biological Process | specification of organ position | ||||
GO:0010450 | Biological Process | inflorescence meristem growth | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MMSSSSSAAF PLDHLAPSPT EQLCYVHCNC CDTILAVGVP CSSLFKTVTV RCGHCANLLS 60 VNLRGLLLPP AAPPANQLSF GGGGGHSLLS PTSPHGLLDE FALQTPSLLM DQASANLSNT 120 ITGRSNSSSC ASNNLPAAPP MPAAKPPVQQ EPEIPKSAPS VNRPPEKRQR VPSAYNRFIK 180 DEIQRIKAGN PDITHREAFS AAAKNWAHFP HIHFGLMPDQ GLKKTFKTQD GAEDMLLKDG 240 LYAAAAAAAA AANMGITPF* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.10363 | 0.0 | stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Preferentially expressed in immature organs containing meristems and organ primordia. Expressed in phloem of developing vascular tissues of young seedling shoots. Expressed in the phloem of midvein vasculature of young leaves. Does not show polar expression pattern in leaf primordia. {ECO:0000269|PubMed:17216490, ECO:0000269|PubMed:17676337}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Seems to be associated with phloem cell differentiation. {ECO:0000269|PubMed:17676337}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00620 | PBM | Transfer from AT2G45190 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1NG370400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU960773 | 0.0 | EU960773.1 Zea mays clone 228481 yabby15 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025828644.1 | 1e-149 | protein YABBY 4-like | ||||
Swissprot | A2X7Q3 | 1e-122 | YAB4_ORYSI; Protein YABBY 4 | ||||
Swissprot | Q6H668 | 1e-122 | YAB4_ORYSJ; Protein YABBY 4 | ||||
TrEMBL | A0A3L6QIB7 | 1e-158 | A0A3L6QIB7_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Aa01223.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1445 | 38 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 8e-64 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1NG370400.1.p |
Publications ? help Back to Top | |||
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