PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG369300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 296aa    MW: 31964.2 Da    PI: 8.9638
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG369300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-171562148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd+ll+d+++  G g+W++ ++  g++R++k+c++rw +yl
  Pavir.1NG369300.1.p 15 KGPWTPEEDKLLADYIQANGHGSWRLLPKLAGLNRCGKSCRLRWTNYL 62
                         79********************************************97 PP
2Myb_DNA-binding51.13.1e-1668113148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++++eE++ +v++++  G++ W+ Ia+ ++ gRt++++k++w+++l
  Pavir.1NG369300.1.p  68 RGPFSPEEQKSIVQLHAIVGNK-WSMIAAQLP-GRTDNEIKNYWNTHL 113
                          89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.8311062IPR017930Myb domain
SuperFamilySSF466897.49E-3112109IPR009057Homeodomain-like
SMARTSM007171.3E-131464IPR001005SANT/Myb domain
PfamPF002492.2E-161562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-231669IPR009057Homeodomain-like
CDDcd001671.27E-91762No hitNo description
PROSITE profilePS5129426.02863117IPR017930Myb domain
SMARTSM007175.9E-1567115IPR001005SANT/Myb domain
PfamPF002491.8E-1468113IPR001005SANT/Myb domain
CDDcd001671.38E-1070113No hitNo description
Gene3DG3DSA:1.10.10.607.0E-2770117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MGRAPCCDRT KGLKKGPWTP EEDKLLADYI QANGHGSWRL LPKLAGLNRC GKSCRLRWTN  60
YLRPDIKRGP FSPEEQKSIV QLHAIVGNKW SMIAAQLPGR TDNEIKNYWN THLKKQLRRM  120
GLAEPPPGPA AGCPAARHMA QWETARLEAE ARLSLLASSS SGAMSATAAT TTTSASSSST  180
YAAGAEKAAS EPADIFLRLW SSDIGDSFRR RKTAAPPALV KRKDAAVIKQ EAPALPGPGD  240
DSSAASNEKE ALEVYQMLLD FAGEELGLFH GRHGGFSLFP PHDDVLTEAS LDTAF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-27131175108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in cotyledon and hypocotyls of germinating seeds. {ECO:0000269|PubMed:19232308}.
UniprotTISSUE SPECIFICITY: Expressed in the shoot apex, young flower buds, developing carpels and siliques (PubMed:19232308). Expressed in floral meristem, initiating floral primordia and developing flowers (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG369300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0386930.0BT038693.1 Zea mays full-length cDNA clone ZM_BFb0309J21 mRNA, complete cds.
GenBankKJ7275280.0KJ727528.1 Zea mays clone pUT5388 MYB transcription factor (MYB103) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791223.11e-167transcription factor MYB41-like
SwissprotQ9M2D92e-84MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A3L6QIY21e-166A0A3L6QIY2_PANMI; MYB transcription factor
STRINGPavir.Aa01232.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54093157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.14e-71myb domain protein 17