PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1NG367100.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 449aa MW: 47584.1 Da PI: 8.7561 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.3 | 4.6e-19 | 209 | 259 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+tae+Aa a+++ + kl+ge Pavir.1NG367100.2.p 209 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 259 59******9.**********955...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.86E-31 | 208 | 268 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.9E-32 | 209 | 267 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-23 | 209 | 267 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.1E-38 | 209 | 272 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.024 | 209 | 266 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.9E-11 | 210 | 221 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.6E-12 | 210 | 259 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.9E-11 | 232 | 248 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 449 aa Download sequence Send to blast |
MEPADRGGGG RGRGWKGKAV TSGGPAAGRQ LAPVLEDAPA AALLRPLKKI RSLHRSLSTL 60 SSPAPASPDS SSSLSNPVSP PATTLPSTRH VFPFAYDPAP AAPAAPRLLP LLQYSSVYHQ 120 PLPPQQQQPL QHQQMISFGG SQQHQQQPPF GAPASPPFPP QLVAPEVQQQ MLLRYWSEAL 180 NLSPRGFRGG AVPPALYQQL RRSAGPPKLY RGVRQRHWGK WVAEIRLPRN RTRLWLGTFD 240 TAEDAAMAYD REAFKLRGEN AKLNFPDLFL GKGRVGGSGR TSASAAASCS SSSSSAPPTP 300 DDTNTNPAQQ HHGEQPSSCE AKPLLPETEQ ANNSEPESNP QLQPADHQGG DCNAAMLQPS 360 VTSGGVWGPA DEAWLSAWGP GSSVWDYDMD NAHGLLLQSR FAGEAASMDY ESSAPVAPAT 420 PVAGTAMASA ASISLPPPPR SPAYTWKD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-20 | 208 | 266 | 4 | 63 | ATERF1 |
3gcc_A | 8e-20 | 208 | 266 | 4 | 63 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.7951 | 2e-39 | callus| leaf| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1NG367100.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727674 | 0.0 | KJ727674.1 Zea mays clone pUT5601 AP2-EREBP transcription factor (EREB76) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809849.1 | 0.0 | ethylene-responsive transcription factor ERF054-like | ||||
TrEMBL | A0A2S3GRD6 | 0.0 | A0A2S3GRD6_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Aa01242.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20880.1 | 1e-35 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1NG367100.2.p |