PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG336000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 861aa    MW: 98600.2 Da    PI: 6.3913
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG336000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR145.23.2e-14102185190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          k+Y++YA++ GF   + ks++  ++g + +  + Cs+ g+ + +         +r++t+++C a++ +k+++d   ++++ +leHnH+l+
  Pavir.1NG336000.1.p 102 KYYKQYAEDSGFAAIILKSSYL-KSGVCRRLVLGCSRAGRGRANACY-----LSRESTKINCPARISLKLRQDRWLHIDDARLEHNHPLN 185
                          69***********999999988.7888***************99998.....999****************99999************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.1E-11102185IPR004330FAR1 DNA binding domain
PfamPF105517.7E-25288381IPR018289MULE transposase domain
PROSITE profilePS509669.211575612IPR007527Zinc finger, SWIM-type
PfamPF044341.2E-5584608IPR007527Zinc finger, SWIM-type
SMARTSM005750.0047587614IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 861 aa     Download sequence    Send to blast
MSHVESTSML EELAREATID DVAVLVDGND TELHGNGEVL KSVDVPQDLG GISAKEVPLH  60
EGKEVILVDD NDSGQEDGGK AKVDENTPHF GLRFKTYDDA LKYYKQYAED SGFAAIILKS  120
SYLKSGVCRR LVLGCSRAGR GRANACYLSR ESTKINCPAR ISLKLRQDRW LHIDDARLEH  180
NHPLNQSSAS LTNCYRKLTD AKNGEPASRL KSRRNVPSEK EQGNFTEIGR LKFGEGDDEY  240
IQKFFGNMQN KNPYFFYLVD LDNLGRLRNL FWSDARSRAA NDYFGHDVVY FDTSYLTEKY  300
DLPLVFFTGM NNHGQPVLFG TGLLSDLSAD SYAWLFRAFL ACMKGRCPKA IITEHYNAIL  360
DAVREVLPEV RHRLCLYRIM KDVSDNLKEH AEFKTIKNAL KKVTYGSLKI PEFEADWKKI  420
IEEHGLGENE CLSSLYEHRQ LWAPAYLRDK FWAGMSISQC GESISSYYDG FVYPKTSLKQ  480
FFSKYEMILE NKYKKEWQAD EESSHRTPLT VTKFYMEEQL AKAYTINMFR KFQDELKATM  540
YCDGMPIKVD GRLVTFEVKE CSYMEDGKDT ESRTYEVYFC KEEKVEIECE CGFVQFTGIL  600
CRHALSVLKL QEIFEIPSDY VVDRWRRDYK KLYSKANKPN EMPLSGNVER SDYLFSQCSQ  660
LLNLGFVSES RYLVTLKLLR EAERSLLDDG LAARDRQSTF LSFEADAPEN GQGLFNPQFS  720
ESVKHSQSAH AKRRGRPPKK VTESNAETVT QPNKEQDFLR SSFVTDDTNM IQGPSASHLE  780
GPHMATQGGI DLMEGIPNLS FSNHFGMDIN HQHQVPSHQR MQQSNFMQVQ AEPHEFANQW  840
VYHPMMQDNP VLRTPTRRTG *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.3000.0callus| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG336000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793601.10.0protein FAR1-RELATED SEQUENCE 6-like
RefseqXP_025793602.10.0protein FAR1-RELATED SEQUENCE 6-like
TrEMBLA0A2T7CCQ10.0A0A2T7CCQ1_9POAL; Uncharacterized protein
TrEMBLA0A2T8I4X10.0A0A2T8I4X1_9POAL; Uncharacterized protein
STRINGPavir.J27368.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-110FAR1-related sequence 6