PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG331600.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 925aa    MW: 103747 Da    PI: 9.0722
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG331600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.62.9e-103003791297
                          HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                   B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                           +  l +p   a +      +++ + led++ ++ +v+l  +   ++  + +GW+ Fv+++ +k g+f++F ++ r++f   v+vf
  Pavir.1NG331600.2.p 300 FEEFLLIPPAVAHKLADL--TNQHVYLEDSEEKRSKVRL--SVVNDSLAFHQGWNIFVSDHSIKWGEFLLFDYIARNTF--SVRVF 379
                          445688999988666444..4557***************..555566889************************99988..77776 PP
2B330.66e-108409061482
                          T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                   B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                          ++l l+k+  +++++k +    + l+d+  r W v +    ++  + +t+GW++Fv an+L++gD + +
  Pavir.1NG331600.2.p 840 KWLELSKSLPNAIKQKRHDRNVILLKDPMKRLWPVLY--HENPVFVGFTAGWRHFVAANNLQSGDLCDL 906
                          4566677766666666666778999************..***************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.095289382IPR003340B3 DNA binding domain
SuperFamilySSF1019361.77E-13290382IPR015300DNA-binding pseudobarrel domain
CDDcd100173.11E-8292379No hitNo description
Gene3DG3DSA:2.40.330.105.3E-14292382IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.6E-5292382IPR003340B3 DNA binding domain
PfamPF023625.3E-8297378IPR003340B3 DNA binding domain
SMARTSM010190.29832923IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-10835911IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.22E-10838910IPR015300DNA-binding pseudobarrel domain
CDDcd100177.11E-8838904No hitNo description
PROSITE profilePS508639.812862924IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 925 aa     Download sequence    Send to blast
MSGAAPDATC RKRLRSHDSK IQSDDKEEGK KMSGGGSEVK NRKTSIAALF ETGKQKEGRT  60
NSNKNMMADD QEKERIIRNG HNKVKSMKKV SPACNANKKK MQIDVEEEGK NRHNGDHKLA  120
NRKESPTLYE KENNKEKMNK THKEKTWAAD RKERKILSRH NSIKSGEVAT AFFGNEKKGK  180
RLKKTNNQEL QSDEDEENAP FTTAVKKKRM RPGESPEVMM RHEKTNRSVP SIVSKEKKID  240
TSSGSKYKKR RRDRALPKKG KMSDNKIHSG RVQEKKICGG GKEKNKYTPF AFFKFIYNRF  300
EEFLLIPPAV AHKLADLTNQ HVYLEDSEEK RSKVRLSVVN DSLAFHQGWN IFVSDHSIKW  360
GEFLLFDYIA RNTFSVRVFG LNSHERLSFK KDPKRAGHGV GSGPAPQDNN NENDACIRSH  420
RKTLIMISES GASAHNEDVM NLTTSDADST HHVTINTNKD LERVESGVGN LPDGECGTNY  480
ISAACSERKT SSEIVNDAAP LIRENDGRVG HELQVHDLDE DLIRKQGISC TPLGSIVTVE  540
KHQIHNNMNI SQNSCRKYAA PGGFRCLEKW WRAGLNIRAA LDGIVLIELE NTKETDSKLV  600
DGYGSIGLNT MDEYFCSEGN HTHNPPVFTM TVKEPLGADR VSKCRLGETE IDHSVNEKCG  660
GAAVQIETQG EQLEPVGSIV NTQRNNIPLS VNAVVPDKYS AIGLNPVGPE VTRSFVEPMF  720
TVPIEKASTP VEISKNGSSK TQIDHDVNEK GTIVQLETKM DQVEPVGSSV CSQSSNKAMS  780
GNRVAAHVSE HCFSKQEYRK FINCVVPESL LPMKDKIMES DDHSLLKFNL QLCVPDTTRK  840
WLELSKSLPN AIKQKRHDRN VILLKDPMKR LWPVLYHENP VFVGFTAGWR HFVAANNLQS  900
GDLCDLIKEP DDDEPVYSVL ITRQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG331600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809292.10.0B3 domain-containing protein Os02g0598200-like
RefseqXP_025809300.10.0B3 domain-containing protein Os02g0598200-like
TrEMBLA0A2T7F8J20.0A0A2T7F8J2_9POAL; Uncharacterized protein
STRINGPavir.Aa01439.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.15e-09B3 family protein