PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1NG319100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 374aa MW: 40014.1 Da PI: 7.203 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 175.7 | 1.3e-54 | 21 | 146 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdeel+++yL++k+++ ++ +++ e+d++k+ePwdLp++++ +ekewyfF+ +d+ky+tg r+nrat+sgyWkatgkd+ Pavir.1NG319100.1.p 21 LPPGFRFHPTDEELITHYLARKAADARFAP-RAVGEADLNKCEPWDLPARATMGEKEWYFFCVKDRKYPTGLRTNRATESGYWKATGKDR 109 79*************************988.88***************998999************************************ PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 e+++ +++lvg+kktLvfy+grapkg kt Wvmheyrl Pavir.1NG319100.1.p 110 EIFR-GKALVGMKKTLVFYTGRAPKGGKTGWVMHEYRL 146 ****.99*****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-64 | 11 | 183 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.684 | 21 | 183 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.9E-30 | 22 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MENDVHHHQQ QQRQRQEAME LPPGFRFHPT DEELITHYLA RKAADARFAP RAVGEADLNK 60 CEPWDLPARA TMGEKEWYFF CVKDRKYPTG LRTNRATESG YWKATGKDRE IFRGKALVGM 120 KKTLVFYTGR APKGGKTGWV MHEYRLDGKH AAAAAGSSSS RLIPSIRAGA SKDEWVLCRV 180 FKKSIEPPVV AAGKRSSGSG ACMEAADVEG PSVSMADDLA ACALPPLMDV SGGSGAAAMS 240 LSAAAAAGIE LPPPPSQHVT CFSNALEGHF LNPPFGLLPS AGPAAADHFA MAASASPFLV 300 SMMQTQYDGG AGVGGMVHEL LREGGGWYSK LGERERLSGG ASQDTGLTSE VNPAAISSSR 360 QHMDHHDASL WDY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-57 | 7 | 183 | 3 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-57 | 7 | 183 | 3 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-57 | 7 | 183 | 3 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-57 | 7 | 183 | 3 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 3e-57 | 7 | 183 | 3 | 165 | NAC domain-containing protein 19 |
4dul_B | 3e-57 | 7 | 183 | 3 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.31667 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1NG319100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT065898 | 0.0 | BT065898.1 Zea mays full-length cDNA clone ZM_BFb0063K15 mRNA, complete cds. | |||
GenBank | KJ728021 | 0.0 | KJ728021.1 Zea mays clone pUT6157 NAC transcription factor (NAC40) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796322.1 | 0.0 | NAC domain-containing protein 92-like | ||||
TrEMBL | A0A3L6RW05 | 0.0 | A0A3L6RW05_PANMI; NAC domain-containing protein 92-like | ||||
STRING | Pavir.Aa01544.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2730 | 37 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 3e-83 | NAC domain containing protein 100 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1NG319100.1.p |