PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.1NG180100.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Nin-like

Protein Properties

Length: 486aa MW: 53115.4 Da PI: 4.5488

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.1NG180100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	52.1	1.3e-16	377	422	7	52
RWP-RK 7 ledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +ed+ +++ kdAAkeL++++T LKr CR+++ +RWP Rki s+ Pavir.1NG180100.1.p 377 MEDVLDRMHMSKKDAAKELNISATSLKRLCRKNNTNRWPGRKIMSI 422 57777889***********************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	13.924	360	443	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-15	377	422	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 486 aa Download sequence Send to blast
MADESYDIDG DVSRFLQTPP PESHPLAVAA PDDDEPVAPH VGAPQDAPAV VQVGVALQTP 60 PLNPDPAPAN VENRQAPTMD VGPPPPCDLA PAALAPTDPA SSFEALFADI VLPDLGTMSL 120 YDEFMDDEDN DEVDQALIRS IEDAGNADIS SALAEHTAVP PAEEDLDFVP FVRGQLDCSN 180 CRSIREVLHE SANRKLHFTV HVADPGTFQH AVFDRTYIDA YGQIILNEMC YLDLRQRMHE 240 WVQEFIANTV EMLKEDTSGQ PKDSCSTKDA STPADYDAHR ELELDMLKHI FSSPTDAPTE 300 AVAPQFTPEA PQPATRAEEN IINPDGILFG TANQREPGLS RPAILESFQV AAQDGASGTS 360 ASHLPAKQRK RMSGFPMEDV LDRMHMSKKD AAKELNISAT SLKRLCRKNN TNRWPGRKIM 420 SINNKIKKLE EAAHKHVGMI GLLAFKEKLD KLKLERAQLY SSFVRDMQEN EKHNGGWGAG 480 SSGSK*

Sequence ? help Back to Top

Protein Sequence Length: 486 aa Download sequence Send to blast

MADESYDIDG DVSRFLQTPP PESHPLAVAA PDDDEPVAPH VGAPQDAPAV VQVGVALQTP  60
PLNPDPAPAN VENRQAPTMD VGPPPPCDLA PAALAPTDPA SSFEALFADI VLPDLGTMSL  120
YDEFMDDEDN DEVDQALIRS IEDAGNADIS SALAEHTAVP PAEEDLDFVP FVRGQLDCSN  180
CRSIREVLHE SANRKLHFTV HVADPGTFQH AVFDRTYIDA YGQIILNEMC YLDLRQRMHE  240
WVQEFIANTV EMLKEDTSGQ PKDSCSTKDA STPADYDAHR ELELDMLKHI FSSPTDAPTE  300
AVAPQFTPEA PQPATRAEEN IINPDGILFG TANQREPGLS RPAILESFQV AAQDGASGTS  360
ASHLPAKQRK RMSGFPMEDV LDRMHMSKKD AAKELNISAT SLKRLCRKNN TNRWPGRKIM  420
SINNKIKKLE EAAHKHVGMI GLLAFKEKLD KLKLERAQLY SSFVRDMQEN EKHNGGWGAG  480
SSGSK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.1NG180100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002444338.1	1e-150	uncharacterized protein LOC8070087
TrEMBL	A0A3L6RPH1	0.0	A0A3L6RPH1_PANMI; Uncharacterized protein
STRING	Pavir.J15709.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14429	10	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38340.1	1e-09	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Pavir.1NG180100.1.p