PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG090100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 475aa    MW: 50848.2 Da    PI: 8.2685
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG090100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.62e-11153190340
                          XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLea 40 
                          + k  rr+++NReAAr+sR+RKka+i++Le+    L++
  Pavir.1NG090100.1.p 153 DAKTLRRLAQNREAARKSRLRKKAYIQNLETSRIRLSQ 190
                          67999*************************85555544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1708.0E-9145196No hitNo description
SMARTSM003386.9E-5151204IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.979153197IPR004827Basic-leucine zipper domain
PfamPF001701.7E-8154191IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.63E-7155197No hitNo description
PROSITE patternPS000360158173IPR004827Basic-leucine zipper domain
PfamPF141449.9E-28239319IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MGDRPWQQPH EQAYYPHAGM VQAASSSAHG GLIKEAGGGY DMAEFDQALL LYLNSQDQTS  60
SSAIQDQPQT LNIFPSQPMH VVEPALPKGS MGANNTTPNA CSGPSSKRPP PAGGSKDGKT  120
AAVKREAGSS GGAIGSGTPS TSNQQEGPRS TPDAKTLRRL AQNREAARKS RLRKKAYIQN  180
LETSRIRLSQ LEQELHRSRT QGAVFGGGIL SGSNGGLSPE AAWFDMEHAR WQEEHGKMMR  240
HLRAALEAEE HAAALAPAAD AQLRQMVDAA VAHHGVLAEL RAAVARADAF HLVSGAWASA  300
AERCFLWIGG FRPSELIKVA VRHAEPLTEP QAMGVCGVQQ WAREAEAALD HELQAMHRSV  360
AEAVSSDAAA LLCPYSDVPG YMAVMSLAIG KLASLEAFVR QADALRLQAL HRLPQILTAR  420
QSARCFLAIA DYSHRLRALS ELWHNRPRHE PPATTPASGS SHGPPYQSSR DGLV*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Specifically expressed in roots. {ECO:0000269|PubMed:12777042}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG090100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9513168e-60EU951316.1 Zea mays clone 695528 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951578.10.0transcription factor TGAL9 isoform X3
SwissprotQ52MZ21e-138TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBLA0A368PGX70.0A0A368PGX7_SETIT; Uncharacterized protein
STRINGPavir.J04905.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27323669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.31e-98bZIP family protein