PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG079300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ARR-B
Protein Properties Length: 636aa    MW: 68898.2 Da    PI: 6.6177
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG079300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.56.1e-28210263155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          kpr++W+ eLH++Fv av+qL G++kA+Pk+il+lm+v+ +t+e+v+SHLQkYRl
  Pavir.1NG079300.1.p 210 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKKILDLMNVENITRENVASHLQKYRL 263
                          79*******************.********************************8 PP
2Response_reg79.51.2e-26281361109
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          vl vdD+p+ +++l+++l + +y +v+++ ++  al+ll+ek+  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a+ge +++ +
  Pavir.1NG079300.1.p  28 VLAVDDDPTCLKVLENLLLRCQY-HVTTTGQAATALKLLREKKdqFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGETQTVMK 115
                          799********************.***************888888*******************87754.558***************** PP

                          HHHTTESEEEESS--HHHHHH CS
         Response_reg  89 alkaGakdflsKpfdpeelvk 109
                           +  Ga d+l Kp+ +e+l++
  Pavir.1NG079300.1.p 116 GITHGACDYLLKPVRIEQLRT 136
                          *******************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.1E-1981635IPR017053Response regulator B-type, plant
SuperFamilySSF521729.39E-3525146IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23006.1E-4225165No hitNo description
SMARTSM004485.0E-3226138IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.15927142IPR001789Signal transduction response regulator, receiver domain
PfamPF000728.0E-2428137IPR001789Signal transduction response regulator, receiver domain
CDDcd001568.34E-2729141No hitNo description
SuperFamilySSF466896.09E-20207267IPR009057Homeodomain-like
PROSITE profilePS5129411.34207266IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-29208268IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-24210263IPR006447Myb domain, plants
PfamPF002492.3E-6212262IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 636 aa     Download sequence    Send to blast
MTVEEVKLQA KASGGHGAKD QFPVGMRVLA VDDDPTCLKV LENLLLRCQY HVTTTGQAAT  60
ALKLLREKKD QFDLVISDVH MPDMDGFKLL ELVGLEMDLP VIMLSANGET QTVMKGITHG  120
ACDYLLKPVR IEQLRTIWQH VVRRKSSDAK IHGNDNDDSG KKLQLASGEG DNGGVNRNKR  180
TSRKGRDDNG DEGDDSDDSN ENGDSSTQKK PRVVWSVELH RKFVAAVNQL GIDKAVPKKI  240
LDLMNVENIT RENVASHLQK YRLYLKRLSA DASRQANLTA AFGGRNPAYV NMGLEAFRQY  300
NAYGRYRPVP TPNHSQSNNL LARMNSPAFG MHGLLPPQPV QIGHTQNNLS TSLGNVGGMN  360
NGNLIRGAHM PLQDSSKCFP TGPSGNSFAN ISNGTTLVPT NNLPLHSLEP SNQQHLGRMH  420
SSSADPFNSF VGESPQFPDL GRCNTTWPTA VSSSNVHELG QKDSMSQPNL RVNGPKLEPL  480
SSFTEASSQI PLLGNEMQGQ VASLASTGLS MPFNQEAVPF AYGSSANSRE MLNNNLALSN  540
SGINSSLPNL RIDNSVVPRQ TLDGGNSGGG VPPLQDGRMD QQAVSSQLNY SSDLMGTSRL  600
QRGLSGGLDD IVVDMFRPDR ADDGVPFIDG DWELV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-25206269164ARR10-B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.8710.0callus| leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00072SELEXTransfer from AT4G31920Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG079300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8587450.0HQ858745.1 Zea mays clone UT1443 ARR-B transcription factor mRNA, partial cds.
GenBankHQ8587600.0HQ858760.1 Zea mays clone UT1502 ARR-B transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682995.10.0two-component response regulator ORR24
SwissprotQ6H8050.0ORR24_ORYSJ; Two-component response regulator ORR24
TrEMBLK3YQT60.0K3YQT6_SETIT; Two-component response regulator
STRINGPavir.Ab00568.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81473447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-105response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]