PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG042700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 307aa    MW: 32920.9 Da    PI: 7.1147
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG042700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.22.3e-18212245134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          C++C +t+Tp+WR gpdg+ tLCnaCGl+y  ++
  Pavir.1NG042700.1.p 212 CTHCDSTETPQWRAGPDGPGTLCNACGLRYTMNK 245
                          ******************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.072206244IPR000679Zinc finger, GATA-type
SMARTSM004013.9E-16206260IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.76E-15208269No hitNo description
Gene3DG3DSA:3.30.50.103.3E-15210246IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.84E-15211267No hitNo description
PROSITE patternPS003440212237IPR000679Zinc finger, GATA-type
PfamPF003204.1E-16212246IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MSELGILSLS RHDFPDAAEY GGGGGGGGPC LFHAGLCCPN DPLDTIMTNP DLFNADLLED  60
LFTAAALPPP HRGWGVLPTG GGKEVFDVDA ADDDVGDRDG GACSDGAPRL PPPVRAALSD  120
DDSSWTTTTS SLETESPPPP PVSRLVVPRK KRDMSVNRRK RLWSLDMPSV PASRATASGG  180
DGDHDGGRSV DGGVRQRLLG ARPRNRRTQR ACTHCDSTET PQWRAGPDGP GTLCNACGLR  240
YTMNKLLPEY RPSTSPSFRS DKHSNRHRKV VKLRETKVLK EKISNMLPAP DYANFMDVCT  300
YISTGQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1194206RQRLLGARPRNRR
2200208ARPRNRRTQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG042700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804973.11e-157uncharacterized protein LOC112883918
TrEMBLA0A2T7F1781e-163A0A2T7F178_9POAL; Uncharacterized protein
STRINGPavir.J33064.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127772434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.13e-26GATA transcription factor 4