PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1NG027300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ARF | ||||||||
Protein Properties | Length: 1068aa MW: 118961 Da PI: 6.5138 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 66.9 | 2.9e-21 | 71 | 172 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d + +W++++i+r++++r++lt+GW+ Fv ++L +gD+v+F Pavir.1NG027300.1.p 71 FCKTLTASDTSTHGGFSVPRRAAEKIlppldfNMQPPA-QELQARDIHDTVWTFRHIFRGQPKRHLLTTGWSLFVGGKRLFAGDSVIFV- 158 99*****************************9555544.49************************************************. PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 ++++++l+++++r+ Pavir.1NG027300.1.p 159 -RDERQQLLLGIRRA 172 .4577888****997 PP | |||||||
2 | Auxin_resp | 117.5 | 1.1e-38 | 197 | 280 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras++eFv++++k++kal+ +++s+GmRf+m+fete+ rr++Gt++g+sdldpvrW+nS+Wr+L+ Pavir.1NG027300.1.p 197 AAHAAANNSPFTIFYNPRASPTEFVIPFAKYQKALYsNQISLGMRFRMMFETEELGMRRYMGTITGISDLDPVRWKNSQWRNLQ 280 79*********************************989********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.27E-40 | 60 | 200 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.5E-39 | 64 | 186 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.92E-18 | 70 | 162 | No hit | No description |
PROSITE profile | PS50863 | 11.491 | 71 | 173 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.2E-20 | 71 | 173 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.6E-19 | 71 | 172 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.5E-33 | 197 | 280 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 2.4E-9 | 932 | 1019 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 29.021 | 934 | 1018 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 2.84E-7 | 951 | 1013 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1068 aa Download sequence Send to blast |
MQKDIDAHVP SYPNLPSKLI CLLHSVTLHA DPDTDEVYAQ MTLQPVNTYG KEALQLSELA 60 LKHARPQMEF FCKTLTASDT STHGGFSVPR RAAEKILPPL DFNMQPPAQE LQARDIHDTV 120 WTFRHIFRGQ PKRHLLTTGW SLFVGGKRLF AGDSVIFVRD ERQQLLLGIR RASRQPTNIS 180 SSVLSSDSMH IGVLAAAAHA AANNSPFTIF YNPRASPTEF VIPFAKYQKA LYSNQISLGM 240 RFRMMFETEE LGMRRYMGTI TGISDLDPVR WKNSQWRNLQ VGWDESAAGE RRNRVSMWEI 300 EPIAAPFFIC PQPFFGVKRP RQLDDESSEM ENLFKRTMPW LGEEICLKDA QTQNTTMPGL 360 SLVQWMNMNR QQSSTLANTG IQSEYMHTLS NPAMQNLGAT ELARQLYVQS HLLQQNSAQL 420 NASKLPQQMQ PINELSKGVL FFNQLDAISN QEQKQEAGNQ QRQQQQPVSQ AIPLSQAQAT 480 LVQAQVIVQN QQQQQPQQSS PTKNQQGTSN QQLLLSQQQQ DQNLQLQQQQ QLLLQQLQRQ 540 QQQQHNQQLN KLPGQLMNMA GQQTQLSDQE LQLQLLQKLQ QQSLISQPAV TLSRLPLIQE 600 QQKLLLDMQQ LSSSRSLAQQ RIMPQQDSKV SLQASSAPPP MKQEQQQKLS HKQVALADVS 660 DVAFPPISST NITGKAGSTL IIPGAAQSVL TEEIPSCSTS PSTANGNHLA HPTTGRNEHC 720 KVNIDKVPQS SALMSVPTSV EAVTAAPIMG KDLPKLNHNV KGNVITSKSP TGATGPDNLF 780 NNVPSTDNLE TASSATSLWP TQTDGLLHQG FPTSNFNQQQ MFKDALPDVE IQDADPTNNA 840 FFGISNDGPL GFPIETEGLL VSALNPVKCQ THMSTDAENN YHIQKDAQQE ISTSMVSQSF 900 GHSDIAFNSI DSAINDGALL NRNPWPPAPP QRMRTFTKVY KRGAVGRSID IGRYSGYEEL 960 KHALARMFGI EGQLEDRQRI GWKLVYKDHE DDILLLGDDP WEEFVNCVKC IRILSPQEVQ 1020 QMSLDGDLGN NVLSNQACSS SDGGNAWRPR GDQNPINPSI AFYDQFE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-139 | 2 | 301 | 89 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.15144 | 0.0 | callus| leaf| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1NG027300.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM004535 | 0.0 | HM004535.1 Zea mays auxin response factor 20 (ARF20) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025801433.1 | 0.0 | auxin response factor 5-like | ||||
Swissprot | Q6Z2W3 | 0.0 | ARFE_ORYSJ; Auxin response factor 5 | ||||
TrEMBL | A0A3L6RPM9 | 0.0 | A0A3L6RPM9_PANMI; Auxin response factor | ||||
STRING | Pavir.J32718.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1409 | 35 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | auxin response factor 19 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1NG027300.1.p |