PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG010700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 865aa    MW: 97403.9 Da    PI: 7.8337
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG010700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.0003558580123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C  Cg +F  + +Lk+H+++H
  Pavir.1NG010700.1.p 558 HRCLECGACFQKPAHLKQHMQSH 580
                          79*******************99 PP
2zf-C2H222.43.1e-07586610123
                          EEET..TTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                          + Cp  dC+ s++rk++L+rH+ +H
  Pavir.1NG010700.1.p 586 FICPleDCPFSYKRKDHLNRHMLKH 610
                          78*********************99 PP
3zf-C2H211.30.0011617640323
                          ET..TTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   3 Cp..dCgksFsrksnLkrHirt.H 23 
                          C+   C+++Fs k n++rH +  H
  Pavir.1NG010700.1.p 617 CTvdGCDRRFSIKANMQRHVKEfH 640
                          88889***************9988 PP
4zf-C2H215.26.1e-05652676123
                          EEET..TTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                          + C+   C+k F+  s Lk+H  +H
  Pavir.1NG010700.1.p 652 FICKeeGCNKAFKYLSKLKKHEESH 676
                          789999***************9988 PP
5zf-C2H217.71e-05743767223
                          EET..TTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                          kC+   C+ sFs+ksnL++H++  H
  Pavir.1NG010700.1.p 743 KCTfdGCDHSFSSKSNLTKHMKAcH 767
                          799999****************955 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.101.7E-727164IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513755.023565IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.38866100IPR002885Pentatricopeptide repeat
PfamPF0153516897IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.046137167IPR002885Pentatricopeptide repeat
PfamPF015350.0021142164IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.745168202IPR002885Pentatricopeptide repeat
PfamPF015350.018170198IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.1E-4201234IPR002885Pentatricopeptide repeat
PfamPF015354.2E-4201230IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.752203233IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.101.7E-7256380IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513758.55269299IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.0016274299IPR002885Pentatricopeptide repeat
PfamPF130414.5E-11299347IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.959300334IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007567.9E-9302335IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.098335365IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.0027337365IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.621371401IPR002885Pentatricopeptide repeat
PfamPF015350.018374398IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.101.7E-7435465IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513757.015437471IPR002885Pentatricopeptide repeat
SMARTSM0035519512534IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.9E-4555577IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.591558585IPR007087Zinc finger, C2H2
SMARTSM003550.04558580IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280560580IPR007087Zinc finger, C2H2
SuperFamilySSF576671.78E-10570612No hitNo description
Gene3DG3DSA:3.30.160.602.0E-11578612IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.037586615IPR007087Zinc finger, C2H2
SMARTSM003551.9E-4586610IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280588610IPR007087Zinc finger, C2H2
SuperFamilySSF576672.51E-7596646No hitNo description
Gene3DG3DSA:3.30.160.603.7E-8613642IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.512615645IPR007087Zinc finger, C2H2
SMARTSM003550.027615640IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280617640IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-6649676IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.201652676IPR007087Zinc finger, C2H2
SMARTSM003550.0087652676IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280654676IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.8E-4684704IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551.7684709IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280686709IPR007087Zinc finger, C2H2
SMARTSM0035513712733IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.5E-6727764IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.15E-9727784No hitNo description
PROSITE profilePS5015711.863742772IPR007087Zinc finger, C2H2
SMARTSM003553.8E-4742767IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280744767IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.1E-5771795IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.245773799IPR007087Zinc finger, C2H2
SMARTSM003552.6773799IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280775799IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 865 aa     Download sequence    Send to blast
MNRSICHHLL SQCKTLRELQ KIHAQAVAQG LHPQHQPVSC KIFRCYADFG RAADARKLFD  60
EIPRPDLVSF TSLMSLHIRL EHHRAAVSLF SRVVADGHHR PDGFAVVGAL SASGGAGDQQ  120
VGRAVHGMIF RLGLDYEVVV GNALVDMYSR CGKFESALLV FDRMFLKDEI TWGSMLHGYI  180
KCAGLDLALS FFDQMPVKSV VAWTALITGH VQGRLPVRAL ELFGRMVLEG HRPTHVTVVG  240
VFSACADIGA LDLGRIIHGY GTKCNASSNI IVSNALMDMY AKSGSIEMAF SVFQEVQSKD  300
AYTWTTMISC FTVQGDGRKA LELFRDMLRS SVVPNSVTFV SVLSACSHAG LIEEGRELFG  360
TMREMYSIDP QLEHYGCMID LLGRGGLLEE AEALIVDMNV EPDIVIWRSL LSASLVHRND  420
RLAEIAGKEI MKREPGDDGV YVLLWNMYAS SNKWIEAREI RQQMLTRKIF KKPGCSWIEV  480
DGVVHEFLMC SGDEIDGDAS VGQKGFKDIR CYKCEFCTIV RSKKCLIQAH MIAHHKDELE  540
KSETYNSNGE KIVCEEEHRC LECGACFQKP AHLKQHMQSH SNERLFICPL EDCPFSYKRK  600
DHLNRHMLKH QGKLFGCTVD GCDRRFSIKA NMQRHVKEFH EDENVTKSNQ QFICKEEGCN  660
KAFKYLSKLK KHEESHVKLN YTEVVCCEPG CMKMFTNVES LRAHNQSCHQ HVQCEICGKK  720
HLKKNIKRHL QAHDELASGE RIKCTFDGCD HSFSSKSNLT KHMKACHDQL KPFTCRVAGC  780
GKAFTYKHVR DNHEKSSAHV YVEGDFVETD EQLRLRPRGG RKRKALSVET LTRKRVTILG  840
EASSLEDGAE YLSWLLSGGD DSAQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D3e-5394133338PLS9-PPR
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1815823RPRGGRKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.197380.0callus| leaf| root| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG010700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795590.10.0pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like
TrEMBLK3Z0X60.0K3Z0X6_SETIT; Uncharacterized protein
STRINGPavir.J03392.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23823882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-105transcription factor IIIA