PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG547300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 201aa    MW: 20848.4 Da    PI: 6.6435
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG547300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.4e-054870123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ykC+ C + F++   L  H+++H
  Pavir.1KG547300.1.p 48 YKCTFCRRGFPTAQALGGHMNVH 70
                         9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.7E-64574No hitNo description
Gene3DG3DSA:3.30.160.603.3E-44672IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00614870IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.5334875IPR007087Zinc finger, C2H2
PfamPF139127.0E-64872IPR007087Zinc finger, C2H2
PROSITE patternPS0002805070IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MDLSQETKDE ASPSGEAHDD DDDDKELQKQ RSDSGGGGGD DEGTRQPYKC TFCRRGFPTA  60
QALGGHMNVH RRHRGRSAAP TTTGASPTSR SGGCYEQQPH SSTTATVVSF GGQTHPASVA  120
SMAAGGAALL HAERHHHHPQ QQPYELRLFG RDCAAGGRGK EGGAGDGRRD RCYAKNGDGG  180
GGHGGAEELD LELRLGGAGS *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG547300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9718331e-47EU971833.1 Zea mays clone 371263 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823363.12e-71zinc finger protein 6-like
TrEMBLA0A2T7FE078e-71A0A2T7FE07_9POAL; Uncharacterized protein
STRINGPavir.Ab03315.1.p1e-141(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145472224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.11e-10C2H2 family protein