PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG472800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 297aa    MW: 30546.3 Da    PI: 5.8216
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG472800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.83.8e-082122521055
                          HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          + RR+ri +++ +L+el+ +      +K++ +++LekA+ Y+k Lq
  Pavir.1KG472800.1.p 212 KSRRERISERLRTLQELVLNG-----TKVDLVTMLEKAISYVKFLQ 252
                          89****************997.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.17202251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.29E-10204256No hitNo description
Gene3DG3DSA:4.10.280.101.1E-10204259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.85E-12206262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-9208257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-5212252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MALMREHGGC GGFDAGGADV FDALGYGHDA LLGFDAAAAL LFWGGGSNAG AGYVADGGNV  60
CWPPAGARAS SSVLAFDRPT AAAAAAALSG EGEEEAEEEE RDAWIDAADR TYGDAAARAP  120
PAVSVGFDAA TGCFTLTERA ASSGGAGRAT FGLLFPSTAA PVRATQKRTY VGVEPPAAVS  180
PKKHCGAGRK ATGKAKSAPT MPTKDPQSLA AKSRRERISE RLRTLQELVL NGTKVDLVTM  240
LEKAISYVKF LQLQVKVLAT DEFWPAQGGK APEISQVREA LDAILSSASQ RGQLMN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG472800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1096621e-107AK109662.1 Oryza sativa Japonica Group cDNA clone:002-143-H06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822733.11e-143putative transcription factor bHLH086
TrEMBLA0A2T7FB561e-157A0A2T7FB56_9POAL; Uncharacterized protein
STRINGPavir.J04215.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.17e-54ROOT HAIR DEFECTIVE6