PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG464500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 276aa    MW: 30238.4 Da    PI: 8.2345
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG464500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.19.4e-342680155
              G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                         kprlrWtp+LHerFveav++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl
  Pavir.1KG464500.1.p 26 KPRLRWTPDLHERFVEAVTKLGGPDKATPKSVLRLMGMKGLTLYHLKSHLQKYRL 80
                         79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.0322383IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.6E-332381IPR009057Homeodomain-like
SuperFamilySSF466899.85E-172682IPR009057Homeodomain-like
TIGRFAMsTIGR015578.6E-252681IPR006447Myb domain, plants
PfamPF002498.4E-102879IPR001005SANT/Myb domain
PfamPF143791.3E-23123169IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MFEGMERAGY GGASAMGGVV LSRDPKPRLR WTPDLHERFV EAVTKLGGPD KATPKSVLRL  60
MGMKGLTLYH LKSHLQKYRL GKQSKKDTGL EASRGAFAAQ GINFSAPVPP SIPSTAGNNT  120
GEMPLADALK YQIEVQRKLH EQLEVQKKLQ MRIEAQGKYL HTILEKAQNN LSYDATGAAN  180
LEASRSQLTD FNLALSGFMD NVSQVCEQNN GELAKAMTED NLTASNLGFQ LYHGVHDGED  240
VKCTPDEGLL LLDLNIRGGY DHRSAADLKM NQHMR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-212682157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-212682157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-212682157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-212682157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.335890.0callus| leaf| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00544DAPTransfer from AT5G45580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG464500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808925.10.0myb family transcription factor PHL11-like
TrEMBLA0A2S3GSU50.0A0A2S3GSU5_9POAL; Uncharacterized protein
STRINGPavir.Aa00783.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39403470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45580.14e-66G2-like family protein