PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1KG438700.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | G2-like | ||||||||
Protein Properties | Length: 305aa MW: 32297.8 Da PI: 10.4268 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.1 | 7.1e-32 | 24 | 77 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWt+eLH++Fv+av+ LGG++kAtPk il+lm+v gLt++hvkSHLQ+YR+ Pavir.1KG438700.2.p 24 PRLRWTSELHRSFVRAVDCLGGPDKATPKLILQLMDVRGLTIAHVKSHLQMYRS 77 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-30 | 20 | 78 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.14 | 20 | 80 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.4E-23 | 24 | 77 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 5.91E-16 | 24 | 77 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.0E-6 | 25 | 76 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MGSGAGGGGS SGTATRRYNR STVPRLRWTS ELHRSFVRAV DCLGGPDKAT PKLILQLMDV 60 RGLTIAHVKS HLQMYRSSGH DMRKREMQPR LGHLKHSFTI DGGGPKEFFC LPVKRAKAGA 120 EAASTATYET MQGNSDMGAA GTRRCGDDHA QAVPVGSRRI TGCLGLQWQR DASAASALQE 180 LGFWVRGTEP LPFKIDRPIA NRLSPVVRQL SSKEIKCANR CFLFGAATRD EPAKRRSPSQ 240 LPASIDPKAA VAAVSSWPSE GNCVLSPPAS STTSFSGCSG PGRGSCLFAG QGINLDLALS 300 ICGS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 9e-18 | 25 | 78 | 3 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 9e-18 | 25 | 78 | 3 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 9e-18 | 25 | 78 | 3 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 9e-18 | 25 | 78 | 3 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1KG438700.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT087811 | 1e-106 | BT087811.1 Zea mays full-length cDNA clone ZM_BFb0210E07 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025799208.1 | 0.0 | uncharacterized protein LOC112879085 | ||||
TrEMBL | A0A3L6QKA4 | 1e-176 | A0A3L6QKA4_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Ab02674.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14600.1 | 3e-27 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1KG438700.2.p |