PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG418200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 302aa    MW: 31309.9 Da    PI: 4.9159
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG418200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-18146196255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+++AeIrdp  ng  +r++lg++++ae+Aa a+++a+ +++g
  Pavir.1KG418200.1.p 146 HYRGVRQRP-WGKFAAEIRDPARNG--ARVWLGTYDSAEDAAVAYDRAAYRMRG 196
                          8********.**********97676..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.18E-28145204No hitNo description
Gene3DG3DSA:3.30.730.103.7E-31145204IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-23146206IPR016177DNA-binding domain
PfamPF008471.2E-12146196IPR001471AP2/ERF domain
PROSITE profilePS5103224.026146204IPR001471AP2/ERF domain
SMARTSM003807.1E-37146210IPR001471AP2/ERF domain
PRINTSPR003676.1E-13147158IPR001471AP2/ERF domain
PRINTSPR003676.1E-13186206IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MLLNPACEAA SLDSIRHHLL DEPPAAAPRP VYCRSASFGS LVADQWSESL PFRPDDADDM  60
VVFGALRDAF SRGWLPDGSI AAVKPEPPAS PDCPYEFGSC LGAGGLLPAS PEEEEEDPET  120
PTAEAASAAT TPGAGEEAAA VGRGKHYRGV RQRPWGKFAA EIRDPARNGA RVWLGTYDSA  180
EDAAVAYDRA AYRMRGSRAL LNFPLRIGSE IAAATAAAAT APAPTVGEKR PSPEPSASSD  240
SSSPSSSSSS SGTPKRRKRG EAAAATMAMA LVPPSPAQPP VQLTLPAHPW FAAGPVQQLV  300
S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-37143209268ATERF1
3gcc_A1e-37143209268ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.1698e-78callus| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG418200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277141e-156KJ727714.1 Zea mays clone pUT5653 AP2-EREBP transcription factor (EREB195) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953322.11e-148ethylene-responsive transcription factor 2
TrEMBLA0A3L6RT381e-160A0A3L6RT38_PANMI; Ethylene-responsive transcription factor 2
STRINGPavir.Ab02556.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38002972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.12e-36ethylene responsive element binding factor 1