PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1KG411500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | YABBY | ||||||||
Protein Properties | Length: 265aa MW: 27510.4 Da PI: 8.0253 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 207.4 | 5.2e-64 | 20 | 222 | 5 | 170 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee........................ 70 s +eq+Cyv+Cn C+tilav vP +slfk+vtvrCGhC++llsvnl+ aa + s+ Pavir.1KG411500.1.p 20 SPTEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPPAAPPANQLSFGGGgggggggghsllspisphglldef 109 578*********************************************99777666665666665567999******************9 PP YABBY 71 .......lleelkveeenlksnvekeesastsvssekl.....senedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdi 147 l+++ + +n+ s ++++s ++ ++ + + ++ e+++ p v+rPPekrqrvPsaynrfik+eiqrika+nPdi Pavir.1KG411500.1.p 110 alqapslLMDQASANLSNTMSGRSNSSSCASNLPAAPMpaakpPVLQEPEITKSAPsVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDI 199 997777655555555555555555555555566666667877766677777776665********************************* PP YABBY 148 shreafsaaaknWahfPkihfgl 170 +hreafsaaaknWahfP+ihfgl Pavir.1KG411500.1.p 200 THREAFSAAAKNWAHFPHIHFGL 222 *********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 4.0E-69 | 21 | 222 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.09E-7 | 163 | 215 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 3.7E-4 | 171 | 214 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MMSSSSSSSA AFPLDHLAPS PTEQLCYVHC NCCDTILAVG VPCSSLFKTV TVRCGHCANL 60 LSVNLRGLLL PPAAPPANQL SFGGGGGGGG GGGHSLLSPI SPHGLLDEFA LQAPSLLMDQ 120 ASANLSNTMS GRSNSSSCAS NLPAAPMPAA KPPVLQEPEI TKSAPSVNRP PEKRQRVPSA 180 YNRFIKDEIQ RIKAGNPDIT HREAFSAAAK NWAHFPHIHF GLMPDQGLKK TFKTQDAAED 240 MLLKDGLYAA AAAAAAANMG ITPF* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.10363 | 1e-101 | stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Preferentially expressed in immature organs containing meristems and organ primordia. Expressed in phloem of developing vascular tissues of young seedling shoots. Expressed in the phloem of midvein vasculature of young leaves. Does not show polar expression pattern in leaf primordia. {ECO:0000269|PubMed:17216490, ECO:0000269|PubMed:17676337}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Seems to be associated with phloem cell differentiation. {ECO:0000269|PubMed:17676337}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1KG411500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU960773 | 1e-169 | EU960773.1 Zea mays clone 228481 yabby15 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025828644.1 | 1e-149 | protein YABBY 4-like | ||||
Swissprot | A2X7Q3 | 1e-121 | YAB4_ORYSI; Protein YABBY 4 | ||||
Swissprot | Q6H668 | 1e-121 | YAB4_ORYSJ; Protein YABBY 4 | ||||
TrEMBL | A0A3L6QIB7 | 1e-154 | A0A3L6QIB7_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Ab02534.1.p | 1e-152 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1445 | 38 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 7e-48 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1KG411500.1.p |
Publications ? help Back to Top | |||
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