PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG410400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 306aa    MW: 32220.8 Da    PI: 5.9464
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG410400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.45e-161562148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g W++eEde+l d++ ++G g+W++ +++ g++R +k+c++rw +yl
  Pavir.1KG410400.1.p 15 KGLWSPEEDEKLRDYILRHGHGCWSALPAKAGLHRNGKSCRLRWINYL 62
                         678*******************************************97 PP
2Myb_DNA-binding54.23.3e-1769113248
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          g +++eE+e    +++ lG++ W++Iar+++ gRt++++k++w++yl
  Pavir.1KG410400.1.p  69 GMFSPEEEETVMSLHATLGNK-WSRIARHLP-GRTDNEVKNYWNSYL 113
                          569******************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.8831062IPR017930Myb domain
SuperFamilySSF466894.12E-2912109IPR009057Homeodomain-like
SMARTSM007171.5E-121464IPR001005SANT/Myb domain
PfamPF002499.6E-141562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-211669IPR009057Homeodomain-like
CDDcd001671.04E-101862No hitNo description
PROSITE profilePS5129425.02963117IPR017930Myb domain
SMARTSM007173.8E-1467115IPR001005SANT/Myb domain
PfamPF002499.6E-1669113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.1E-2670117IPR009057Homeodomain-like
CDDcd001673.07E-1271113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MVCKACDKPK PNYRKGLWSP EEDEKLRDYI LRHGHGCWSA LPAKAGLHRN GKSCRLRWIN  60
YLRPGLKHGM FSPEEEETVM SLHATLGNKW SRIARHLPGR TDNEVKNYWN SYLKKRVEAG  120
AKEGPGTPAP PATSSGAGDT EDSRQSAKPG EDGAAAADGP ADSGGSSEPR ESSSADSSCL  180
TGPPAAACRP HAPPVAPKVM FADWLDMDVV DCLGGGPGAA APGLDAASAG AVGASDQHHR  240
QVMSQGSVQV DGPCGVDVSL HGFGDSGASC WEFQEHFDGI GIGIDQMSTT GFCDLLSMSD  300
YFGLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-25111193110B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.103920.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG410400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0387441e-171BT038744.1 Zea mays full-length cDNA clone ZM_BFb0323B03 mRNA, complete cds.
GenBankHQ8587141e-171HQ858714.1 Zea mays clone UT1170 MYB transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828702.11e-173transcription factor LAF1-like
TrEMBLA0A3L6QD230.0A0A3L6QD23_PANMI; Myb-related protein Myb4
STRINGPavir.Ab02417.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP170737109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.15e-56myb domain protein 19