PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG375500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 867aa    MW: 98849.7 Da    PI: 6.5485
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG375500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR145.32.9e-14108191190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          k+Y++YA++ GF   + ks++  ++g + +  + Cs+ g+ + +         +r++t+++C a++ +k+++d   ++++ +leHnH+l+
  Pavir.1KG375500.1.p 108 KYYKQYAEDSGFAAIILKSSYL-KSGVCRRLVLGCSRAGRGRANACY-----LSRESTKINCPARISLKLRQDRWLHIDDAKLEHNHPLN 191
                          69***********999999988.7888***************99998.....999****************99999************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.3E-11108191IPR004330FAR1 DNA binding domain
PfamPF105517.8E-25294387IPR018289MULE transposase domain
PROSITE profilePS509669.174581618IPR007527Zinc finger, SWIM-type
PfamPF044343.9E-5590614IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 867 aa     Download sequence    Send to blast
MCTPMSNTGS APASMLEELA REATIDDVAV LVEGNGAEQH GNGEVLKSAE VPQDLGGISA  60
KEVPLHEGKE VILVDDNDSG QEDGGKAKVD ENTPRFGLRF KTYDDALKYY KQYAEDSGFA  120
AIILKSSYLK SGVCRRLVLG CSRAGRGRAN ACYLSRESTK INCPARISLK LRQDRWLHID  180
DAKLEHNHPL NQSSASLTNC YKKLTDAKNG EPASRLKGRR NAPSEKEQGN FTEIGRLKFG  240
EGDDEYIQKF FGNMQNKNPY FFYLVDLDSQ GRLRNLFWSD ARSRAANDYF GHDVVYFDTS  300
YLTEKYDLPL VFFTGMNNHG QPVLFGTGLL SDLSADSYAW LFRAFLACMK GRCPKAIITE  360
HYNAILDAVR EVLPEVRHRL CLYRIMKDVS ENLKEHAEFK TIKNALQKVT YGSLKIPEFE  420
ADWKKIIEEH GLGENECLSS LYEHRLLWAP AYLRDKFWAG MSISQCGESI SSYYDGFVYP  480
KTSLKQFFSK YEMILENKYK KEWQADEESS HRTPLTVTKF YMEEQLAKAY TINMFRKFQD  540
ELKATMYCDG MPIKVDGRLV TFEVKECSYM EDGKDTESRT YEVYFCKEEK VEIECECGFV  600
QFTGVLCRHA LSVLKLQEIF EIPSDYVLDR WRRDYKKLYS KANKPNEMPL GGIVERSDYL  660
FSQCSQLLNL GFVSERRYLV TLKLLREAER SLLEDGLAAR DRQSTLLSFE ADAPENGQGL  720
FNPQFSESVK HSQSAHAKRR GRPLKKVTES NAETVTQPNK EQDFLRSSFV TDDTNMIQGS  780
SASHLEGPHM GVQGGIDLME GIPNLSFSNN FGMDINHQHQ VPSHQRMQQS NFMQVQVEPH  840
GFTNQWVYHP MLQDNPVLRT PTRRTG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.3000.0callus| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG375500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972373.10.0protein FAR1-RELATED SEQUENCE 6
TrEMBLK3YG780.0K3YG78_SETIT; Uncharacterized protein
STRINGPavir.Ab02304.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-111FAR1-related sequence 6