PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG368400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 801aa    MW: 90626.3 Da    PI: 9.1802
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG368400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR156.31.1e-1732115190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          +fY++YA++vGF v++++s+ s ++g++   +++C k g+++ e k      r+ra++ t+C ak++vk++ d+  +v+ + l+HnH+++
  Pavir.1KG368400.1.p  32 RFYRKYARRVGFGVSVRRSSFS-QEGTCLYLELMCCKGGRPRYEPKF-----RKRASSTTNCPAKIRVKLWGDKLLHVELVILDHNHPVS 115
                          5*****************9999.6677****************9988.....99*********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.6E-1632116IPR004330FAR1 DNA binding domain
PfamPF105511.0E-28235328IPR018289MULE transposase domain
PROSITE profilePS509668.84522558IPR007527Zinc finger, SWIM-type
PfamPF044341.5E-4527551IPR007527Zinc finger, SWIM-type
SMARTSM005750.0046533560IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 801 aa     Download sequence    Send to blast
MSASSRMEES DGEDIGVPEV GMVFNNHTEV NRFYRKYARR VGFGVSVRRS SFSQEGTCLY  60
LELMCCKGGR PRYEPKFRKR ASSTTNCPAK IRVKLWGDKL LHVELVILDH NHPVSPAMAR  120
FLNSYKQLSG PAKRRLRMGG PGAMPVEEPS KMPMNKLGEL EELLFGESKH HSFVERGRLK  180
LQPGDSEALR IFFTRMQAKN ANFFNVIDLD DEGCIRNVFW ADARSRAMYE YYCDVITLDT  240
SYVVSKHEMP LATFIGVNHH GQSVLMGCAL LSDETAETYS WLLKAWIACM SGNLPKAIVT  300
DYCRGIQSAV SEVIPGVRHR MCLFQIMRKA AERLGGLSEY RAINKAMHKA VFDSLTIDEF  360
EGEWNTLISF NGLQGNDWLR SLYECRASWV PVFIKDTFWA GMSVTQRNET ITPFFDGYVD  420
LKTTLKQFLG KYEMALQSKY GKEAQADFET FHKQRPPVSK FYMEEQLSKV YTHNMFKKFQ  480
DEIEAIMYCH VSLIAVDGPV STFNVKECIF LEDGRRTMSK IFAVTYNADE KDIACICGGF  540
QFSGILCRHS LSMLKFQLVR EIPPQYILDR WKKDFRQLHM MGRPPSDLVP NNRVDRYDYL  600
SMRCLQLVDS AVLSDKYRLA LRLVREMEKF LLNSNTHDDT QPRIKSRVPK VNKPNTVTGQ  660
NVVDAATNNG NVGPKAPETP AVMQASQIQK GGAERGIVPA GYIAVPANVQ QFVANQAAIR  720
PSIVYMVPSG VDPRAFGNGV LMPVMYQQMF QVPQKPNGTV QDTSANGKKK RPRGQKLTET  780
SQQSNGFLYI QGLAAVTNFT *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.167620.0callus| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG368400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828723.10.0protein FAR1-RELATED SEQUENCE 6-like
TrEMBLA0A2T7F8Q90.0A0A2T7F8Q9_9POAL; Uncharacterized protein
STRINGPavir.Ab02190.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-141FAR1-related sequence 6