PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.1KG354000.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 306aa MW: 33315.2 Da PI: 8.1161

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.1KG354000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	24	8.2e-08	172	221	14	63
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 14 ReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 R + +rsR RK+++i+eLe+ v++L++ +L+ ++ +l ++ +l +e+ Pavir.1KG354000.1.p 172 RRSGQRSRVRKLQYIAELERTVDSLQNMGADLAVRVASLCQLHNSLSMEN 221 67889******************************999999999999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd14703	5.80E-16	171	215	No hit	No description
Gene3D	G3DSA:1.20.5.170	3.6E-5	172	224	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MSRSPHLPPR CPPLGPQITR RDDSLFTQSC RFPSGDPFIG EPPCWLDDLL ADSGKVPNFP 60 PLRRAFPDSS NRGRDLSPGG EAEDLLDAVE GGESGSVVEA SCVYGPNSPR QKSRLTTSES 120 SMVNAVLENV PSNPLQYLTI DASSGVNGNM TNGTADANDV YGNPDQDKTF KRRSGQRSRV 180 RKLQYIAELE RTVDSLQNMG ADLAVRVASL CQLHNSLSME NKQLRIQIST LQHAKLIKDG 240 QTQALKNEAE RLKQVSTRHR RSRSVTSCYN PSPYGDASPV NWQMPDMAKL SLDGSSVSPR 300 GGYGL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	171	177	RRSGQRS

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.5089	0.0	callus\| leaf\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.1KG354000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT055788	0.0	BT055788.1 Zea mays full-length cDNA clone ZM_BFb0187P01 mRNA, complete cds.
GenBank	BT068415	0.0	BT068415.1 Zea mays full-length cDNA clone ZM_BFb0176P14 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025815126.1	0.0	basic leucine zipper 2
TrEMBL	A0A3L6RQS5	0.0	A0A3L6RQS5_PANMI; Basic leucine zipper 34
STRING	Pavir.Ab01867.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8137	26	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58120.1	3e-17	bZIP family protein

Link Out ? help Back to Top
Phytozome	Pavir.1KG354000.1.p