PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG326400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 582aa    MW: 64640.5 Da    PI: 8.7196
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG326400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix643.2e-20266362184
             trihelix   1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sesss 77 
                          +Wt ++v++L+ a+ +++e++ ++             ++k++W+ vs++m +r f++sp+qC++k+++lnkryk+++e+ +++t ++ ++
  Pavir.1KG326400.1.p 266 KWTSEMVKLLVSAVAYIDEDIDADHgsssgrkkhamlKRKGKWRLVSSVMTKRDFSVSPQQCEDKFNDLNKRYKRLTEILGRGTaCQIVE 355
                          7**************999999987555677888999899*******************************************95488888 PP

             trihelix  78 tcpyfdq 84 
                          + ++++q
  Pavir.1KG326400.1.p 356 KPALLEQ 362
                          8777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.3E-18264389No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MPPTLASPPA RLYLYLLCCQ LPPTEPSGGG RNGQKKSRKA AGSLLDAPEA PLSFPPRLAA  60
AIPHPIRSSS PASSLHSFPP RDCWEILRRR LAAAAVRAVQ TPAAASFGYF RLPAPQIPQQ  120
ALHRPRKGGG FSPAGSHLLT SLVRLWSQLN IQRAKAFLVF GWDWGALCSR PEGAGVLSSE  180
MEGNLPPRAL IPGGAPFDLG QPFHFADQPQ VVQVHQGAFA APAANQMQGF GGAVKPSLSS  240
EEDADDGHHH GRGKAAAPAS QWHRVKWTSE MVKLLVSAVA YIDEDIDADH GSSSGRKKHA  300
MLKRKGKWRL VSSVMTKRDF SVSPQQCEDK FNDLNKRYKR LTEILGRGTA CQIVEKPALL  360
EQVSLSAKLK EEAKKHLSSK HLHYEEMCSY HNHNRHCLLD DPALQRSLRM ALRSPGEQGK  420
KCSFGYDDED DQMFLSDEDD EDDGFNDDLE FSAEDHRHHR VRGSKKLKHD HEGGHCGSHL  480
SEVAAIDMNQ MFSEGTGGSA AEKSPSGMTA VQIETQRLKI KEEMLKLKQS RLKWLRSCKE  540
KDRELEKMKL ENERMELENE RLELELKLKE IELGIKPKRI Y*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.73900.0callus| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG326400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806041.10.0uncharacterized protein LOC112884725
TrEMBLA0A2T8KWD60.0A0A2T8KWD6_9POAL; Uncharacterized protein
STRINGPavir.Ab01884.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127742636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-60sequence-specific DNA binding transcription factors