PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG313500.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HSF
Protein Properties Length: 479aa    MW: 53143.6 Da    PI: 4.5451
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG313500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.81.9e-34761682103
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y+++++++l+ +isw + gnsfvv+d+++fa++vLp+ Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+h+ F +++k
  Pavir.1KG313500.2.p  76 FLSKTYDLVSEPALDVIISWGAAGNSFVVWDPSTFARDVLPHNFKHNNFSSFVRQLNTYGFRKVHADR---------WEFAHEDFLRDSK 156
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkkse 103
                          +ll++i r++s+
  Pavir.1KG313500.2.p 157 HLLKRIVRRRSS 168
                          ********9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467858.16E-3372165IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.2E-3772165IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.0E-5472165IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-167699IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.3E-3076165IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-16114126IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340115139IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-16127139IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MDRADAGGSS SISDPDAPYS AAAALLLEPK LEDEELPLRQ LASPGPFVPL DQLMPPAAEP  60
PRPLEALLQG PQLPPFLSKT YDLVSEPALD VIISWGAAGN SFVVWDPSTF ARDVLPHNFK  120
HNNFSSFVRQ LNTYGFRKVH ADRWEFAHED FLRDSKHLLK RIVRRRSSPT QQSSIQPGLS  180
SGESSLDPEL HTLRREKNAL LEEVARLKQE HRQTIEQMST LNHRLESAED RQKQMVSFLA  240
KLLQNPSFVR QLKLHREQKE IDSIRVKRKF LKHVPHSSIE SELQNFLLED DDLNFGMDPD  300
NIGLDRVEQP DDIGVLVQSF DTQEELELGS GAQLLEMPPA SGPLGQDPTI GRSKGKSVLC  360
PGLDATSSEA SYLGSISDTM GALSGTMLGT ASTMMDADEE QMWGVDASAP LQSTCSGSSQ  420
QTFSSLASDP YLMDIANKPD KFWDLDFQTL EQGDLQLDKC AIDDPTLQQQ QQRNMKDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-246816811123Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.194880.0callus| leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG313500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9571670.0EU957167.1 Zea mays clone 1584568 heat shock factor protein 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813039.10.0heat stress transcription factor A-3-like
SwissprotQ6H6Q70.0HSFA3_ORYSJ; Heat stress transcription factor A-3
TrEMBLA0A3L6QHX90.0A0A3L6QHX9_PANMI; Heat stress transcription factor A-3-like
STRINGPavir.Ab01320.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.15e-71heat shock transcription factor A3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]
  3. Mittal D,Madhyastha DA,Grover A
    Gene expression analysis in response to low and high temperature and oxidative stresses in rice: combination of stresses evokes different transcriptional changes as against stresses applied individually.
    Plant Sci., 2012. 197: p. 102-13
    [PMID:23116677]