PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG300000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 291aa    MW: 30809 Da    PI: 7.6747
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG300000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.6e-08140184554
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          h+++Er RR+ri +++  L+el+P+       K + a++L +  +Y+k L
  Pavir.1KG300000.1.p 140 HSIAERLRRERIAERMRALQELVPNT-----NKTDRAAMLDEILDYVKFL 184
                          99***********************7.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.02E-15133194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.88E-10133189No hitNo description
PROSITE profilePS5088815.77135184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-14137195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.7E-6140184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-9141190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MAGQPPQGPE DDFLDQFFSM AGGSYSAAAA GGGRVAGDQP FSLALSLDAA AAEASGSGKH  60
AEGGKAVRAP LASDREVVQL PGLFPPVFGG GMQPPQLRPS PPTQVFHAQQ PKQGGAAVGP  120
QPPAPRPKVR ARRGQATDPH SIAERLRRER IAERMRALQE LVPNTNKTDR AAMLDEILDY  180
VKFLRLQVKV LSMSRLGGAG AVAQLVADIP LSVKGEASDS GSKQQIWEKW STDGTERQIA  240
KLMEEDIGAA MQFLQSKALC MMPISLAMAI YDTQHSQDGQ PVKPEPNTPS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144149RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.251620.0callus| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG300000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9721830.0EU972183.1 Zea mays clone 376974 BHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793108.10.0transcription factor UNE12-like isoform X1
SwissprotO227685e-76UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A2S3IH710.0A0A2S3IH71_9POAL; Uncharacterized protein
STRINGGRMZM2G004356_P011e-178(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26563580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.36e-55bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]