PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG229300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 650aa    MW: 68389.6 Da    PI: 9.1299
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG229300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1422e-13175236162
                          XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                          e++ +r+ r+++NRe+A+ sRqRKk ++eeLeekvk++ +   +L ++++ +  e a+l+++
  Pavir.1KG229300.1.p 175 EEDKRRTARLMRNRESAQLSRQRKKRYVEELEEKVKSMHSVINDLNSKISFIVAENATLRQQ 236
                          5677899*********************************999******9999999988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.0E-14174239IPR004827Basic-leucine zipper domain
PfamPF001702.0E-11176237IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.071177237IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.25E-12179237No hitNo description
Gene3DG3DSA:1.20.5.1702.6E-16179237No hitNo description
CDDcd147044.03E-20180231No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MAEPALLDPS PFDLRHYPAH LFDPDLPLAG GDLPLGEFAG DDGLDFDLPV DFSVDDFLLR  60
SPDRGGEGDD SGEGSAAGSG PAASTSASPA TSAANSAVAN AGDREVKHDD SDEGRSGAAL  120
NWSLKRKQAS PGASSDGAKC RRSGDRELSP SASASASASR AAAEDSDERG AGGEEEDKRR  180
TARLMRNRES AQLSRQRKKR YVEELEEKVK SMHSVINDLN SKISFIVAEN ATLRQQLGGG  240
GVSGPPPGLY PPPPLPGIHF PWVPGYAVRP HGSHVPLVPI PRLKPQQTAA AAKVSKKTEV  300
KKAVENKSKT KTKKVASVSL LGLLFVALVF GAFVPGFNHS FGMSGRSNDV IFGNFGHSDA  360
RVFSVSNHGK GPKGGLNSSD MIDTDPGMAG NADGAGQKHH PAHNSSEILP ALLYVPRNGK  420
HVKINGNLII HSVLASEKAV AHRTSNGQSV KDHKETSVAI ARYLSPPGKD TDSKETFPPG  480
APLPQWFREG MEGPILNSGM CSEVFQFDIS AASAKSGGII PASPTVNSSS VNATQKIPKP  540
VPAYGGKLKN RRIMYNEAIP LTGKTANNTE PRAFNSTSES SKVPDSKPAS SVIVSVLADP  600
REAGNGDGDP RVSPKPLSRI FVVVLLDGVR YVTYSCTLPF KSVSPHLVN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177199KRRTARLMRNRESAQLSRQRKKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.163360.0callus| leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in leaf blade, and at lower levels in roots, leaf sheaths, flowers and seeds. {ECO:0000269|PubMed:22084314}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in endoplasmic reticulum (ER) stress response. Acts as ER stress sensor and activates the transcription factor BZIP50 and the chaperone BIP1. {ECO:0000269|PubMed:22050533, ECO:0000269|PubMed:22084314}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG229300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by dithiothreitol- and tunicamycin-induced endoplasmic reticulum (ER) stress response. {ECO:0000269|PubMed:22084314}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807265.10.0bZIP transcription factor 39-like
SwissprotQ6AU900.0BZP39_ORYSJ; bZIP transcription factor 39
TrEMBLA0A2S3HC050.0A0A2S3HC05_9POAL; Uncharacterized protein
STRINGPavir.J00385.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82283545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40950.12e-88bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Takahashi H,Kawakatsu T,Wakasa Y,Hayashi S,Takaiwa F
    A rice transmembrane bZIP transcription factor, OsbZIP39, regulates the endoplasmic reticulum stress response.
    Plant Cell Physiol., 2012. 53(1): p. 144-53
    [PMID:22084314]
  4. Ohta M, et al.
    Analysis of rice ER-resident J-proteins reveals diversity and functional differentiation of the ER-resident Hsp70 system in plants.
    J. Exp. Bot., 2013. 64(18): p. 5429-41
    [PMID:24153418]
  5. Cheng Q, et al.
    An alternatively spliced heat shock transcription factor, OsHSFA2dI, functions in the heat stress-induced unfolded protein response in rice.
    Plant Biol (Stuttg), 2015. 17(2): p. 419-29
    [PMID:25255693]