PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG198800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 555aa    MW: 62003.4 Da    PI: 8.8915
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG198800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.73.7e-1566110348
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rW++eE   l++ v+++ +++W+t+ar ++ gR+++qc++rw  yl
  Pavir.1KG198800.1.p  66 RWSQEENGNLIQMVNLHSSKSWSTVARGIP-GRSPNQCRDRWMFYL 110
                          9*****************************.***********9875 PP
2Myb_DNA-binding513.4e-16117157244
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                          ++W++ Ed +l++a+k +G++ W++ a+ ++ gRt+k +k++w
  Pavir.1KG198800.1.p 117 QPWSEHEDIKLIQAHKIHGSK-WSKLAKLFP-GRTGKAVKNHW 157
                          79*******************.*********.*********** PP
3Myb_DNA-binding46.96.4e-15260304348
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rW++eE + l++ v+++ +++W+t+ar ++ gR++ qc++rw  yl
  Pavir.1KG198800.1.p 260 RWSQEENDNLIQMVNLHSSKSWSTVARGIP-GRSPIQCRDRWMFYL 304
                          8*****************************.***********9875 PP
4Myb_DNA-binding461.2e-14311351244
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                          ++W++ Ed +l++a++ +G++ W + a+ ++ gRt+k +k++w
  Pavir.1KG198800.1.p 311 QPWSEHEDIKLIQAHEIHGSK-WCKLAKLFP-GRTGKAVKNHW 351
                          79*******************.*********.*********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.91459110IPR017930Myb domain
SMARTSM007172.2E-1163112IPR001005SANT/Myb domain
CDDcd001675.92E-1166110No hitNo description
Gene3DG3DSA:1.10.10.601.1E-1666113IPR009057Homeodomain-like
PfamPF139211.0E-1467127No hitNo description
SuperFamilySSF466895.5E-2790167IPR009057Homeodomain-like
PROSITE profilePS5129421.88111165IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.0E-21114166IPR009057Homeodomain-like
SMARTSM007175.2E-13115163IPR001005SANT/Myb domain
CDDcd001671.49E-11118157No hitNo description
PROSITE profilePS5129411.77253304IPR017930Myb domain
SMARTSM007176.0E-12257306IPR001005SANT/Myb domain
SuperFamilySSF466891.16E-26257351IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-17260309IPR009057Homeodomain-like
CDDcd001672.18E-11260304No hitNo description
PfamPF139216.0E-14261321No hitNo description
PROSITE profilePS5129420.023305359IPR017930Myb domain
SMARTSM007173.7E-13309357IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-20310360IPR009057Homeodomain-like
CDDcd001672.12E-11312351No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MRRGGGGAPS RRGSGGSTCC SGEIDWIADE RGELQRPYKH LKDEEHKGTA DCLLHKKGNS  60
LKRSRRWSQE ENGNLIQMVN LHSSKSWSTV ARGIPGRSPN QCRDRWMFYL DPSVNNQPWS  120
EHEDIKLIQA HKIHGSKWSK LAKLFPGRTG KAVKNHWPSL MRKQMKSDLI SGLPEQFLYM  180
PKDQSVTKNK GCSTIQSDQD SSTNIHVSSD SAVRPKSEQG LADERGELQR PSKHLKDEEY  240
KRTADCLPHK KGNSLKRSHR WSQEENDNLI QMVNLHSSKS WSTVARGIPG RSPIQCRDRW  300
MFYLDPAVNN QPWSEHEDIK LIQAHEIHGS KWCKLAKLFP GRTGKAVKNH WPSLLRKQMK  360
SDLVSGLPEQ FPYIPKDPSV TKSKGSSTFQ SDQDSSINIH VSSDSAVRPK PEQGIAENGR  420
NESTLKGTSY DSVHGNGSVS HSVNVSEKVD GQIFRSNSLS CMDQKASSAT GSFPGSLPKE  480
ESTNFLEVTP NRGLCTTYDH LSNDCFDGIC SSADRESQEL HLSSIAYLLD MPYCKSLMIV  540
PPDSPDHGNY ADGM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-25673597105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG198800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828202.10.0transcription factor MYB3R-4-like isoform X1
TrEMBLA0A2T7F4E50.0A0A2T7F4E5_9POAL; Uncharacterized protein
STRINGPavir.J04773.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16796912
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.22e-32myb domain protein 3r-4