PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1KG192800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | GATA | ||||||||
Protein Properties | Length: 353aa MW: 37533.7 Da PI: 9.0654 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 54.7 | 1.4e-17 | 183 | 216 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C+ttkTplWR+gp g+k+LCnaCG+++rk + Pavir.1KG192800.1.p 183 CSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKAR 216 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 2.4E-16 | 177 | 233 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 5.23E-12 | 180 | 215 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 3.1E-14 | 181 | 216 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 12.268 | 181 | 213 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 8.86E-15 | 182 | 214 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 183 | 208 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.6E-15 | 183 | 216 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MSTIYMSHMS TLPLMEGEQD QGLFPAFHVT KDPPILFPFM ISNPVDQLQG QSSYGDQRLS 60 HQVLAESTTH QQFTDRMMMM SGSDVFPRPS PFRPTIQSID GDMIQRSAYD PYDIENTPRA 120 DGSISGWAAA AALPVKMKIM RKATSSEYPE GGAARKPRRR AQAHQDESQQ LQQQAMGVVV 180 RVCSDCNTTK TPLWRSGPCG PKSLCNACGI RQRKARRAAA GAAAAAASAS NGGAPQVASV 240 AAQAKPAKKE KIRADADQSL PFKKRCKMVA VDHAVTAAKA AAPTTVAAPT KQDQDHVSGD 300 KVAAAATEVS MQSKVAAAPD PPAMSSFHAF AADEITDAAM LLMTLSCGLV RS* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in leaves and stems, and, at low levels, in roots. {ECO:0000269|PubMed:23548780}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (By similarity). Influences the expression of nuclear encoded chloroplast-targeted genes. Regulates chloroplast development and promotes chlorophyll accumulation. Modulates plant architecture (e.g. height, length and width of leaf blades, and flowering tillers production) and represses tillering, probably by modulating number of cells. Promotes senescence. Involved in grain filling, panicle development and starch production (PubMed:23548780). {ECO:0000250|UniProtKB:Q9SZI6, ECO:0000269|PubMed:23548780}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1KG192800.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by light, nitrogen, and cytokinin (benzyladenine) treatments, but repressed by darkness and gibberellin (GA). {ECO:0000269|PubMed:23548780}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025795730.1 | 0.0 | putative GATA transcription factor 22 | ||||
Swissprot | Q6YW48 | 1e-117 | CGA1_ORYSJ; Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1 | ||||
TrEMBL | A0A2T7F3S6 | 0.0 | A0A2T7F3S6_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ab00790.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1893 | 38 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26150.1 | 1e-19 | cytokinin-responsive gata factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1KG192800.1.p |
Publications ? help Back to Top | |||
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