PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG184900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 259aa    MW: 26747 Da    PI: 4.6696
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG184900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.7e-185198152
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52
                         + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++aa++ 
  Pavir.1KG184900.1.p 51 PSYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDAAALV 98
                         57*****998.**********843...6*********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-125198IPR001471AP2/ERF domain
CDDcd000187.80E-2051110No hitNo description
PROSITE profilePS5103223.03752109IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-2152109IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.4E-3152111IPR001471AP2/ERF domain
SMARTSM003803.7E-3552115IPR001471AP2/ERF domain
PRINTSPR003673.6E-105364IPR001471AP2/ERF domain
PRINTSPR003673.6E-107591IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MPDGEVPSPA SSGGTSSSPP LSPVELAGPR RGGGGGAEKR ARDRDGGERH PSYRGVRMRA  60
WGKWVSEIRE PRKKSRIWLG TFPTPEMAAR AHDAAALVVK GPAAVLNFPE MAAALPRPAS  120
AAPRDVQAAA ARAAAMEPAL LPPDGGEGPA VAAVSLQPAP PVPAAGQLQQ DEELEAIVEL  180
PRLDEDCGEH VMTTAATAFG AAPPFSFHDA ATPAPWCDPV WIDDDCAGYA AAGHDDLFGL  240
DGGDHGWAQS VPALLWNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1747109972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG184900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0048571e-113AP004857.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1711_D06.
GenBankAP0149581e-113AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankAY2582811e-113AY258281.1 Oryza sativa (japonica cultivar-group) CR223 putative AP2 domain-containing protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795180.11e-105ethylene-responsive transcription factor TINY-like
TrEMBLA0A2S3GN471e-103A0A2S3GN47_9POAL; Uncharacterized protein
STRINGPavir.Ab00844.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.17e-28ERF family protein