PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG066900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 368aa    MW: 39737 Da    PI: 5.0217
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG066900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-173982146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                         rg++++eE++l+++++++lG++ W++Ia++++ gRt++++k++w++
  Pavir.1KG066900.1.p 39 RGAMSPEEELLFLRLHALLGNK-WARIAAHLP-GRTDNEIKNYWNT 82
                         899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.411133IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.7E-11340IPR009057Homeodomain-like
SuperFamilySSF466896.68E-19380IPR009057Homeodomain-like
PROSITE profilePS5129425.1433488IPR017930Myb domain
SMARTSM007172.4E-163886IPR001005SANT/Myb domain
PfamPF002492.1E-163982IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.4E-234187IPR009057Homeodomain-like
CDDcd001676.25E-75982No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MQGHGEWNWN QVRRETGLLR CGKSCRLRWS NHLRPDLKRG AMSPEEELLF LRLHALLGNK  60
WARIAAHLPG RTDNEIKNYW NTRTKRRERA GLPLYPPEVE HEVALIRAGG LNTILGAAAG  120
ADATSVGCVE GQEPPPFLFD VVDPLVSLPL PLPASDSPAL LYYFGKAAQE PPLLPYISNL  180
QIDPSNYMPP LAPLLPPMAH RELPSVQSAA IAAGAALETM LLRRELEHQQ VPDAGLVNFG  240
TMPGLVSYEN ADSAGRRPPG GCSSRSEGGG GIPSHCIQEE VQNLGDKRGC LSGDEKPAKR  300
LVASSVADDK EMPNLLGDGI TGEAPGSDAV VTDQTIFLTA GSIDDDEVQH LMMSSAPLIY  360
DEDGWKQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-21208740107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG066900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826291.11e-178transcriptional activator Myb-like isoform X2
RefseqXP_025826299.11e-178transcriptional activator Myb-like isoform X2
TrEMBLA0A2T7F2941e-179A0A2T7F294_9POAL; Uncharacterized protein
STRINGPavir.Ab00447.1.p1e-149(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2537733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.23e-43myb domain protein 101