PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG050600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TALE
Protein Properties Length: 526aa    MW: 54437.9 Da    PI: 7.8479
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG050600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox261.6e-084454831854
                          HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          +Fe+  ++yp+ +e+  LA++ gLt +qV++WF N R +
  Pavir.1KG050600.1.p 445 MFENflHPYPKDHEKDVLASRSGLTRNQVSNWFINARVR 483
                          5776679******************************88 PP
2BELL378.6e-13303377472
                 BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsa......kpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          e q+ +++Ll++l+ +d++Y+q+ +++q   + F+a +  g+a       + +++A +a+S  +r L+++ia+ i
  Pavir.1KG050600.1.p 303 EAQRVRSHLLKMLHLMDEKYNQCLDEIQSTTAKFNALMQPGAAgvvssgSIRAAFAHRAVSAVYRGLRQRIAGEI 377
                          778889******************************999998833333345789*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.4E-5234375IPR006563POX domain
PfamPF075261.0E-22239374IPR006563POX domain
PROSITE profilePS5007111.402424487IPR001356Homeobox domain
SMARTSM003892.8E-6427491IPR001356Homeobox domain
CDDcd000863.00E-11427488No hitNo description
Gene3DG3DSA:1.10.10.606.1E-25427500IPR009057Homeodomain-like
SuperFamilySSF466891.5E-15428496IPR009057Homeodomain-like
PfamPF059202.4E-15444483IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MASNPSTFAA IGADAMTGGY FMAGGGGGGG GMMSADAPHF HPSLLIEHGG FGFGDAAVGA  60
AAAPSDLGAN YAANNAMLAS FASQLFATAA APPLDDHFGG RTPPEEMGAG YGAGSGGSSA  120
ANLQCPGHSS AMAVWSSSSS YKKLAGTWIS AGGSSAVSVH EPYYLAAGVP DVAGFHYPLI  180
AAAAAANASA SSELSLTLCS KSSPDSALNA AKQCSSGASR SALTELPQAR PRPAHFSVVV  240
ARSRYAAVAQ EVLNDVAGHL LDGVADAAAD SCSGGARPAS GSVGAPSVVS SNRLMASSQD  300
GGEAQRVRSH LLKMLHLMDE KYNQCLDEIQ STTAKFNALM QPGAAGVVSS GSIRAAFAHR  360
AVSAVYRGLR QRIAGEIIAA ASRAVGCWGE SSSSVTAASD AERSWESAFI RKHWAAQQLR  420
RGEQQCWRPQ RGLPEKSVAV LKAWMFENFL HPYPKDHEKD VLASRSGLTR NQVSNWFINA  480
RVRLWKPMIE EMYNDLKKSS GVGGQGTAME PHTSKRRICE VEEGQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG050600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796845.10.0homeobox protein ATH1-like
TrEMBLA0A3L6QE640.0A0A3L6QE64_PANMI; Homeobox protein ATH1-like
STRINGPavir.Ab00820.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31433365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.16e-56homeobox gene 1