PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG044600.4.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ARF
Protein Properties Length: 1127aa    MW: 124325 Da    PI: 6.5452
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG044600.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.24.1e-20140241199
                          EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                          f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d +  +W +++i+r++++r++lt+GW+ Fv  ++L +gD+v+F  
  Pavir.1KG044600.4.p 140 FCKTLTASDTSTHGGFSVPRRAAEKIlppldfNMQPPA-QELQARDIHDTVWAFRHIFRGQPKRHLLTTGWSFFVGGKKLFTGDSVIFV- 227
                          99*****************************9555544.49************************************************. PP

                          -SSSEE..EEEEE-S CS
                   B3  85 dgrsefelvvkvfrk 99 
                           ++++++ +++++r+
  Pavir.1KG044600.4.p 228 -RDERQQILLGIRRA 241
                          .45777789999987 PP
2Auxin_resp117.41.2e-38266349183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          aahaa+++s+F+++YnPras++eFv++++k++kal+ +++s+GmRf+m+fete+   rr++Gt++g+sdldpvrW+nS+Wr+L+
  Pavir.1KG044600.4.p 266 AAHAAANNSPFTIFYNPRASPTEFVIPFAKYQKALYsNQISLGMRFRMMFETEELGMRRYMGTITGISDLDPVRWKNSQWRNLQ 349
                          79*********************************989********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.83E-39129269IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-37134255IPR015300DNA-binding pseudobarrel domain
CDDcd100171.05E-15139231No hitNo description
SMARTSM010191.3E-17140242IPR003340B3 DNA binding domain
PROSITE profilePS5086311.209140242IPR003340B3 DNA binding domain
PfamPF023621.3E-17140241IPR003340B3 DNA binding domain
PfamPF065071.6E-33266349IPR010525Auxin response factor
PfamPF023092.4E-99911078IPR033389AUX/IAA domain
PROSITE profilePS5174529.0219931077IPR000270PB1 domain
SuperFamilySSF542772.09E-710101072No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1127 aa     Download sequence    Send to blast
MKQSPASSAV APAATAASAG GAPPEGERKA PAINADLWYA CAGPLVSLPP VGSLVVYFPQ  60
GHSEQVAASM QKDIDAHVPS YPNLPSKLIC LLHSVTLHAD PDTDEVYAQM TLQPVNTYGK  120
EALQLSELAL KHERPQMEFF CKTLTASDTS THGGFSVPRR AAEKILPPLD FNMQPPAQEL  180
QARDIHDTVW AFRHIFRGQP KRHLLTTGWS FFVGGKKLFT GDSVIFVRDE RQQILLGIRR  240
ASRQPTNISS SVLSSDSMHI GVLAAAAHAA ANNSPFTIFY NPRASPTEFV IPFAKYQKAL  300
YSNQISLGMR FRMMFETEEL GMRRYMGTIT GISDLDPVRW KNSQWRNLQV GWDESAAGER  360
RNRVSMWEIE PIAAPFFICP QPFFGVKRPR QLDDESSEME NLFKRTMPWL GEEICLKDAQ  420
TQNTTMPGLS LVQWMNMNRQ QSSTLANTGI QSEYMHTLSN PAMQNLGATE LARQLYVQSH  480
LLQQNSAQLN ASKLPQQMQP INELSKGVLL FNQLDAISNQ EQKQEAGNQQ RQQQPVSQAI  540
PLSQAQATLV QAQVIVQNQM QQQQQPQQSS PTKNQQGTSN QQLLPSQKQQ DQNLQLQQQQ  600
QLLLQQLQRQ QLHKLPGQLM NMAGQQAQLS DQELQLQLLQ KLQQQSLISQ PAVTLSQLPL  660
IQEQHKLLSD IQQLSGSRSL AQQRIMPQQD SKVSLQASPA PPPMKQEQQQ KLSQKQVALA  720
DVSDVAFAPI SSTNVAGKAG SPLIILGAAQ SVLTEEIPSC STSPSTANGN HLAHPTTGRN  780
EHCKVNIEKV PQSSALMSIP TSVEAVTAAP IMGKDLSKLN HNVKGNVITS KSPTGGTGPD  840
NLLNNVPSTD NLETASSATS LWPTQTDGLL HQGFPTSTFS QQQMFKDALP DVDPTNNAFF  900
GINNDGPLGF PMETEGLLVS ALNPVKCQTH MSTDAENNYH IQKDAQQEIS TSMVSQSFGH  960
SDIAFNSIDS AINDGALLNR NPWPPAPPSQ RMRTFTKVYK RGAVGRSIDI GRYSGYEELK  1020
HALARMFGIE GQLEDRQRIG WKLVYKDHED DILLLGDDPW EEFVNCVKCI RILSPQEVQQ  1080
MSLDGDLGNN VLSNQACSSS DGGNAWRPRC DQNPSNPSIG FYDQFE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1602637045388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.151440.0callus| leaf| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG044600.4.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801433.10.0auxin response factor 5-like
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLA0A3L6RPM90.0A0A3L6RPM9_PANMI; Auxin response factor
STRINGPavir.Ab00366.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19