PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1KG044600.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ARF | ||||||||
Protein Properties | Length: 1127aa MW: 124325 Da PI: 6.5452 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 63.2 | 4.1e-20 | 140 | 241 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d + +W +++i+r++++r++lt+GW+ Fv ++L +gD+v+F Pavir.1KG044600.3.p 140 FCKTLTASDTSTHGGFSVPRRAAEKIlppldfNMQPPA-QELQARDIHDTVWAFRHIFRGQPKRHLLTTGWSFFVGGKKLFTGDSVIFV- 227 99*****************************9555544.49************************************************. PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 ++++++ +++++r+ Pavir.1KG044600.3.p 228 -RDERQQILLGIRRA 241 .45777789999987 PP | |||||||
2 | Auxin_resp | 117.4 | 1.2e-38 | 266 | 349 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras++eFv++++k++kal+ +++s+GmRf+m+fete+ rr++Gt++g+sdldpvrW+nS+Wr+L+ Pavir.1KG044600.3.p 266 AAHAAANNSPFTIFYNPRASPTEFVIPFAKYQKALYsNQISLGMRFRMMFETEELGMRRYMGTITGISDLDPVRWKNSQWRNLQ 349 79*********************************989********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.83E-39 | 129 | 269 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.7E-37 | 134 | 255 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.05E-15 | 139 | 231 | No hit | No description |
SMART | SM01019 | 1.3E-17 | 140 | 242 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.209 | 140 | 242 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-17 | 140 | 241 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.6E-33 | 266 | 349 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 2.4E-9 | 991 | 1078 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 29.021 | 993 | 1077 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 2.09E-7 | 1010 | 1072 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1127 aa Download sequence Send to blast |
MKQSPASSAV APAATAASAG GAPPEGERKA PAINADLWYA CAGPLVSLPP VGSLVVYFPQ 60 GHSEQVAASM QKDIDAHVPS YPNLPSKLIC LLHSVTLHAD PDTDEVYAQM TLQPVNTYGK 120 EALQLSELAL KHERPQMEFF CKTLTASDTS THGGFSVPRR AAEKILPPLD FNMQPPAQEL 180 QARDIHDTVW AFRHIFRGQP KRHLLTTGWS FFVGGKKLFT GDSVIFVRDE RQQILLGIRR 240 ASRQPTNISS SVLSSDSMHI GVLAAAAHAA ANNSPFTIFY NPRASPTEFV IPFAKYQKAL 300 YSNQISLGMR FRMMFETEEL GMRRYMGTIT GISDLDPVRW KNSQWRNLQV GWDESAAGER 360 RNRVSMWEIE PIAAPFFICP QPFFGVKRPR QLDDESSEME NLFKRTMPWL GEEICLKDAQ 420 TQNTTMPGLS LVQWMNMNRQ QSSTLANTGI QSEYMHTLSN PAMQNLGATE LARQLYVQSH 480 LLQQNSAQLN ASKLPQQMQP INELSKGVLL FNQLDAISNQ EQKQEAGNQQ RQQQPVSQAI 540 PLSQAQATLV QAQVIVQNQM QQQQQPQQSS PTKNQQGTSN QQLLPSQKQQ DQNLQLQQQQ 600 QLLLQQLQRQ QLHKLPGQLM NMAGQQAQLS DQELQLQLLQ KLQQQSLISQ PAVTLSQLPL 660 IQEQHKLLSD IQQLSGSRSL AQQRIMPQQD SKVSLQASPA PPPMKQEQQQ KLSQKQVALA 720 DVSDVAFAPI SSTNVAGKAG SPLIILGAAQ SVLTEEIPSC STSPSTANGN HLAHPTTGRN 780 EHCKVNIEKV PQSSALMSIP TSVEAVTAAP IMGKDLSKLN HNVKGNVITS KSPTGGTGPD 840 NLLNNVPSTD NLETASSATS LWPTQTDGLL HQGFPTSTFS QQQMFKDALP DVDPTNNAFF 900 GINNDGPLGF PMETEGLLVS ALNPVKCQTH MSTDAENNYH IQKDAQQEIS TSMVSQSFGH 960 SDIAFNSIDS AINDGALLNR NPWPPAPPSQ RMRTFTKVYK RGAVGRSIDI GRYSGYEELK 1020 HALARMFGIE GQLEDRQRIG WKLVYKDHED DILLLGDDPW EEFVNCVKCI RILSPQEVQQ 1080 MSLDGDLGNN VLSNQACSSS DGGNAWRPRC DQNPSNPSIG FYDQFE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-160 | 26 | 370 | 45 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.15144 | 0.0 | callus| leaf| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1KG044600.3.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025801433.1 | 0.0 | auxin response factor 5-like | ||||
Swissprot | Q6Z2W3 | 0.0 | ARFE_ORYSJ; Auxin response factor 5 | ||||
TrEMBL | A0A3L6RPM9 | 0.0 | A0A3L6RPM9_PANMI; Auxin response factor | ||||
STRING | Pavir.Ab00366.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | auxin response factor 19 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1KG044600.3.p |