PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG044600.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ARF
Protein Properties Length: 1132aa    MW: 124713 Da    PI: 6.5445
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG044600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.24.1e-20145246199
                          EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                          f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d +  +W +++i+r++++r++lt+GW+ Fv  ++L +gD+v+F  
  Pavir.1KG044600.2.p 145 FCKTLTASDTSTHGGFSVPRRAAEKIlppldfNMQPPA-QELQARDIHDTVWAFRHIFRGQPKRHLLTTGWSFFVGGKKLFTGDSVIFV- 232
                          99*****************************9555544.49************************************************. PP

                          -SSSEE..EEEEE-S CS
                   B3  85 dgrsefelvvkvfrk 99 
                           ++++++ +++++r+
  Pavir.1KG044600.2.p 233 -RDERQQILLGIRRA 246
                          .45777789999987 PP
2Auxin_resp117.41.2e-38271354183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          aahaa+++s+F+++YnPras++eFv++++k++kal+ +++s+GmRf+m+fete+   rr++Gt++g+sdldpvrW+nS+Wr+L+
  Pavir.1KG044600.2.p 271 AAHAAANNSPFTIFYNPRASPTEFVIPFAKYQKALYsNQISLGMRFRMMFETEELGMRRYMGTITGISDLDPVRWKNSQWRNLQ 354
                          79*********************************989********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.83E-39134274IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-37139260IPR015300DNA-binding pseudobarrel domain
CDDcd100171.06E-15144236No hitNo description
PROSITE profilePS5086311.209145247IPR003340B3 DNA binding domain
PfamPF023621.3E-17145246IPR003340B3 DNA binding domain
SMARTSM010191.3E-17145247IPR003340B3 DNA binding domain
PfamPF065071.6E-33271354IPR010525Auxin response factor
PfamPF023092.4E-99961083IPR033389AUX/IAA domain
PROSITE profilePS5174529.0219981082IPR000270PB1 domain
SuperFamilySSF542772.09E-710151077No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1132 aa     Download sequence    Send to blast
MKQSPASSAV APAATAASAG GAPPEAAACA GERKAPAINA DLWYACAGPL VSLPPVGSLV  60
VYFPQGHSEQ VAASMQKDID AHVPSYPNLP SKLICLLHSV TLHADPDTDE VYAQMTLQPV  120
NTYGKEALQL SELALKHERP QMEFFCKTLT ASDTSTHGGF SVPRRAAEKI LPPLDFNMQP  180
PAQELQARDI HDTVWAFRHI FRGQPKRHLL TTGWSFFVGG KKLFTGDSVI FVRDERQQIL  240
LGIRRASRQP TNISSSVLSS DSMHIGVLAA AAHAAANNSP FTIFYNPRAS PTEFVIPFAK  300
YQKALYSNQI SLGMRFRMMF ETEELGMRRY MGTITGISDL DPVRWKNSQW RNLQVGWDES  360
AAGERRNRVS MWEIEPIAAP FFICPQPFFG VKRPRQLDDE SSEMENLFKR TMPWLGEEIC  420
LKDAQTQNTT MPGLSLVQWM NMNRQQSSTL ANTGIQSEYM HTLSNPAMQN LGATELARQL  480
YVQSHLLQQN SAQLNASKLP QQMQPINELS KGVLLFNQLD AISNQEQKQE AGNQQRQQQP  540
VSQAIPLSQA QATLVQAQVI VQNQMQQQQQ PQQSSPTKNQ QGTSNQQLLP SQKQQDQNLQ  600
LQQQQQLLLQ QLQRQQLHKL PGQLMNMAGQ QAQLSDQELQ LQLLQKLQQQ SLISQPAVTL  660
SQLPLIQEQH KLLSDIQQLS GSRSLAQQRI MPQQDSKVSL QASPAPPPMK QEQQQKLSQK  720
QVALADVSDV AFAPISSTNV AGKAGSPLII LGAAQSVLTE EIPSCSTSPS TANGNHLAHP  780
TTGRNEHCKV NIEKVPQSSA LMSIPTSVEA VTAAPIMGKD LSKLNHNVKG NVITSKSPTG  840
GTGPDNLLNN VPSTDNLETA SSATSLWPTQ TDGLLHQGFP TSTFSQQQMF KDALPDVDPT  900
NNAFFGINND GPLGFPMETE GLLVSALNPV KCQTHMSTDA ENNYHIQKDA QQEISTSMVS  960
QSFGHSDIAF NSIDSAINDG ALLNRNPWPP APPSQRMRTF TKVYKRGAVG RSIDIGRYSG  1020
YEELKHALAR MFGIEGQLED RQRIGWKLVY KDHEDDILLL GDDPWEEFVN CVKCIRILSP  1080
QEVQQMSLDG DLGNNVLSNQ ACSSSDGGNA WRPRCDQNPS NPSIGFYDQF E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1603037544388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.151440.0callus| leaf| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG044600.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801433.10.0auxin response factor 5-like
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLA0A3L6RPM90.0A0A3L6RPM9_PANMI; Auxin response factor
STRINGPavir.Ab00366.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19