PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1KG044600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ARF | ||||||||
Protein Properties | Length: 1132aa MW: 124713 Da PI: 6.5445 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 63.2 | 4.1e-20 | 145 | 246 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d + +W +++i+r++++r++lt+GW+ Fv ++L +gD+v+F Pavir.1KG044600.1.p 145 FCKTLTASDTSTHGGFSVPRRAAEKIlppldfNMQPPA-QELQARDIHDTVWAFRHIFRGQPKRHLLTTGWSFFVGGKKLFTGDSVIFV- 232 99*****************************9555544.49************************************************. PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 ++++++ +++++r+ Pavir.1KG044600.1.p 233 -RDERQQILLGIRRA 246 .45777789999987 PP | |||||||
2 | Auxin_resp | 117.4 | 1.2e-38 | 271 | 354 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras++eFv++++k++kal+ +++s+GmRf+m+fete+ rr++Gt++g+sdldpvrW+nS+Wr+L+ Pavir.1KG044600.1.p 271 AAHAAANNSPFTIFYNPRASPTEFVIPFAKYQKALYsNQISLGMRFRMMFETEELGMRRYMGTITGISDLDPVRWKNSQWRNLQ 354 79*********************************989********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.83E-39 | 134 | 274 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.8E-37 | 139 | 260 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.06E-15 | 144 | 236 | No hit | No description |
PROSITE profile | PS50863 | 11.209 | 145 | 247 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-17 | 145 | 246 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.3E-17 | 145 | 247 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.6E-33 | 271 | 354 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 2.4E-9 | 996 | 1083 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 29.021 | 998 | 1082 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 2.09E-7 | 1015 | 1077 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1132 aa Download sequence Send to blast |
MKQSPASSAV APAATAASAG GAPPEAAACA GERKAPAINA DLWYACAGPL VSLPPVGSLV 60 VYFPQGHSEQ VAASMQKDID AHVPSYPNLP SKLICLLHSV TLHADPDTDE VYAQMTLQPV 120 NTYGKEALQL SELALKHERP QMEFFCKTLT ASDTSTHGGF SVPRRAAEKI LPPLDFNMQP 180 PAQELQARDI HDTVWAFRHI FRGQPKRHLL TTGWSFFVGG KKLFTGDSVI FVRDERQQIL 240 LGIRRASRQP TNISSSVLSS DSMHIGVLAA AAHAAANNSP FTIFYNPRAS PTEFVIPFAK 300 YQKALYSNQI SLGMRFRMMF ETEELGMRRY MGTITGISDL DPVRWKNSQW RNLQVGWDES 360 AAGERRNRVS MWEIEPIAAP FFICPQPFFG VKRPRQLDDE SSEMENLFKR TMPWLGEEIC 420 LKDAQTQNTT MPGLSLVQWM NMNRQQSSTL ANTGIQSEYM HTLSNPAMQN LGATELARQL 480 YVQSHLLQQN SAQLNASKLP QQMQPINELS KGVLLFNQLD AISNQEQKQE AGNQQRQQQP 540 VSQAIPLSQA QATLVQAQVI VQNQMQQQQQ PQQSSPTKNQ QGTSNQQLLP SQKQQDQNLQ 600 LQQQQQLLLQ QLQRQQLHKL PGQLMNMAGQ QAQLSDQELQ LQLLQKLQQQ SLISQPAVTL 660 SQLPLIQEQH KLLSDIQQLS GSRSLAQQRI MPQQDSKVSL QASPAPPPMK QEQQQKLSQK 720 QVALADVSDV AFAPISSTNV AGKAGSPLII LGAAQSVLTE EIPSCSTSPS TANGNHLAHP 780 TTGRNEHCKV NIEKVPQSSA LMSIPTSVEA VTAAPIMGKD LSKLNHNVKG NVITSKSPTG 840 GTGPDNLLNN VPSTDNLETA SSATSLWPTQ TDGLLHQGFP TSTFSQQQMF KDALPDVDPT 900 NNAFFGINND GPLGFPMETE GLLVSALNPV KCQTHMSTDA ENNYHIQKDA QQEISTSMVS 960 QSFGHSDIAF NSIDSAINDG ALLNRNPWPP APPSQRMRTF TKVYKRGAVG RSIDIGRYSG 1020 YEELKHALAR MFGIEGQLED RQRIGWKLVY KDHEDDILLL GDDPWEEFVN CVKCIRILSP 1080 QEVQQMSLDG DLGNNVLSNQ ACSSSDGGNA WRPRCDQNPS NPSIGFYDQF E* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-160 | 30 | 375 | 44 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.15144 | 0.0 | callus| leaf| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1KG044600.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025801433.1 | 0.0 | auxin response factor 5-like | ||||
Swissprot | Q6Z2W3 | 0.0 | ARFE_ORYSJ; Auxin response factor 5 | ||||
TrEMBL | A0A3L6RPM9 | 0.0 | A0A3L6RPM9_PANMI; Auxin response factor | ||||
STRING | Pavir.Ab00366.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1409 | 35 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | auxin response factor 19 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1KG044600.1.p |