PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG029600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 279aa    MW: 29651.5 Da    PI: 8.1151
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG029600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.63.6e-18184217134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          C +C +t+Tp+WR gpdg+ tLCnaCG++y  ++
  Pavir.1KG029600.1.p 184 CKHCDSTETPQWRAGPDGPGTLCNACGIRYTMNK 217
                          ******************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.2E-15178232IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.11178216IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.03E-15180241No hitNo description
Gene3DG3DSA:3.30.50.101.1E-14182218IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.93E-14183239No hitNo description
PfamPF003206.2E-16184218IPR000679Zinc finger, GATA-type
PROSITE patternPS003440184209IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
YCDGSCGGGG PCLLHAGLCC PNDPLDTIMT NPDLFNADLL EDLFAAAAAP GNVFDVDAAD  60
KDACCQDGGG ACSDGAPRLP PAVRAALSDS SWTTTSSLET ASPPSPPPPV SAPLVVPRKK  120
RDMSVKRGKR MWSLDMPSVP ASRDSASGGD GDHDGRRVGV SGGGVRQRLL GAARPRNRQT  180
QRACKHCDST ETPQWRAGPD GPGTLCNACG IRYTMNKLLP EYRPSTSPSF RSDKHSNRHR  240
KVVELRETKV LKEKAVNMLL PPDYPNFMDV CKYISTGQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG029600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804973.11e-130uncharacterized protein LOC112883918
TrEMBLA0A2T7F1781e-136A0A2T7F178_9POAL; Uncharacterized protein
STRINGPavir.J15523.1.p1e-150(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127772434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.15e-27GATA transcription factor 4