PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.T137500.1
Common NamePOPTR_0010s03000g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family FAR1
Protein Properties Length: 564aa    MW: 63665.5 Da    PI: 9.3271
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.T137500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR164.52.9e-2071145189
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                      +fY+ YA++vGF++r+ + ++s+++g++ +r+fvCskeg++ +              +r+gC a ++v+++++gkw+v++++++HnHel
  Potri.T137500.1  71 EFYSVYATRVGFRTRTGQLYRSRTDGSVASRRFVCSKEGFQLN--------------SRMGCPAFIRVQRRDSGKWVVDQIHKDHNHEL 145
                      6***************************************876..............5899***************************9 PP
2FAR169.29.8e-22226301291
             FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                      fY +YA e+GF++r+ +  +sk++g+it+r+fvCskeg++++              +r+gC a +++k++++g+w+v++l+++HnH+l p
  Potri.T137500.1 226 FYLRYADEAGFKTRIGQLFRSKNDGSITSRRFVCSKEGFQHP--------------SRVGCGAFMRIKRQDSGTWMVDRLQKDHNHDLEP 301
                      9**************************************999..............4899***************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.7E-1671145IPR004330FAR1 DNA binding domain
PfamPF031012.0E-17226301IPR004330FAR1 DNA binding domain
PfamPF105515.3E-29400492IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MVFDSTPSLF NNTRSSSSDP YSEEYGNAMI VRAHPLGTAR ANNNVNVEGA RGPGLEPCIG  60
LEFDSADDAR EFYSVYATRV GFRTRTGQLY RSRTDGSVAS RRFVCSKEGF QLNSRMGCPA  120
FIRVQRRDSG KWVVDQIHKD HNHELGDVEE SRPPLLPQRT PTGRKSSAKV SSKSKLKFLA  180
EVDDGQPCFS RSISFKRIKP GGDGGQPKAE PYAGLVFSSV DEAFHFYLRY ADEAGFKTRI  240
GQLFRSKNDG SITSRRFVCS KEGFQHPSRV GCGAFMRIKR QDSGTWMVDR LQKDHNHDLE  300
PQTRTHTKSS TASKKFIDEV NGGLDTLDLS EINNGVRSNI SQGNNIGSEW YHLLLDYFQS  360
KQAKDTGFFY SVQVDNGVCM SVFWADGRSR FASSQFGDAI VVDTSYRKTN YLVPFATFVG  420
VNHHKQPVLL GCALIANESK ESFIWLFRTW LRAMSGCRPK SIIADQDMAI QQAIAHVFPG  480
TRHRFSMWQI RAKERENLRS LSNEFKYEYE KCIYDSQTNA DFNTMWNALV NKYGLKEMYG  540
SKKCMKSVKA GFHCTSEIRD TDQ*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.T137500.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006378129.10.0protein FAR1-RELATED SEQUENCE 7
SwissprotQ9M8J30.0FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBLA0A2K1R5H20.0A0A2K1R5H2_POPTR; Uncharacterized protein
STRINGPOPTR_0010s03000.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.10.0FAR1-related sequence 7
Publications ? help Back to Top
  1. Ritter A, et al.
    The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis.
    Nat Commun, 2017. 8: p. 15235
    [PMID:28492275]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]