PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.T133100.1
Common NamePOPTR_0437s00210g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 414aa    MW: 46925.6 Da    PI: 4.8374
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.T133100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS651.5e-2011234737287
             GRAS  37 pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLl 129
                      +++ l++ ++eA++++ a+    l++ l+ + ++  ++  +  +++ + +++P   +sh+taN+ Ilea  ++ + +HiiDfd+++G+QW +++
  Potri.T133100.1 112 SVHHLVKAYKEAMENKEAE----LAEVLTRKISK--KVGPTGEIDEHLLKIFPDGMISHFTANSVILEAKPRDtDVLHIIDFDMGEGMQWSSMI 199
                      4555666666666666665....55444444443..4555566677899********************99995666***************** PP

             GRAS 130 qaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp.....gEalaVnlvlqlhrlldesv 218
                       aL  ++++         ++      +    t++rL++ A+ +g+ +e + +   +l+dl  ++++ k+     +E la n++ +l ++ +++ 
  Potri.T133100.1 200 MALGRKQKELQ------THN----TMKVRGDTKRRLHDCANPFGLILEVEEV---ELQDL-ARKIKGKRkggerREWLAFNCMWALSQMGRKR- 278
                      ****9987722......233....6778889*******************98...45555.3444444444444***************8333. PP

             GRAS 219 sleserdevLklvkslsPkvvvvveqeadhnsesFle.rflealeyysalfdsleaklpres.eerikvEr 287
                       ++ +  +++++ k++ + + v ++  ++ +  +F + +  e ++ + al++s+e k+p+   e+ri +E 
  Potri.T133100.1 279 -SRRHVLDFVRMAKEILASISVYSNT-SNGGILTFGDgGAWELFKDCPALLESIEWKFPNCFiEARIAMEC 347
                      .3333578888888888888776654.45556677652567888888888888888888776677777775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035145.2E-18112347IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MDADIHPFES SPPLATIDST SNELVDFPVD SDLMNIDEYS PLDFEEFELI WRDQNGYLSK  60
GLEERKVTEK CSPRPSTIWS AGAISISTMD ASLIQQPLTL PTGDIEIDNQ LSVHHLVKAY  120
KEAMENKEAE LAEVLTRKIS KKVGPTGEID EHLLKIFPDG MISHFTANSV ILEAKPRDTD  180
VLHIIDFDMG EGMQWSSMIM ALGRKQKELQ THNTMKVRGD TKRRLHDCAN PFGLILEVEE  240
VELQDLARKI KGKRKGGERR EWLAFNCMWA LSQMGRKRSR RHVLDFVRMA KEILASISVY  300
SNTSNGGILT FGDGGAWELF KDCPALLESI EWKFPNCFIE ARIAMECLFV APYASSRAWI  360
QELEGLRLSN ESLLEAKEMV REGEAPYAVR IEGENYIEMV WEFRGTQLIK FSA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.T133100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2165441e-157AC216544.1 Populus trichocarpa clone POP016-D10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011015890.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLU7E1450.0U7E145_POPTR; Uncharacterized protein
STRINGPOPTR_0437s00210.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42742761
Representative plantOGRP9520612
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.15e-10GRAS family protein