PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.T081300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | AP2 | ||||||||
Protein Properties | Length: 276aa MW: 31463.7 Da PI: 7.9882 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.2 | 3e-11 | 40 | 96 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n ++k+ + g ++ +e A a++ a++k++g Potri.T081300.1 40 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEEAAGHAYDLAALKYWG 96 57*******************99998898888888*****9999***********98 PP | |||||||
2 | AP2 | 51.8 | 2e-16 | 139 | 190 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g Potri.T081300.1 139 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 190 89****99**********99966...3.6*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.0E-7 | 40 | 96 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-14 | 40 | 106 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 8.63E-15 | 40 | 106 | No hit | No description |
PROSITE profile | PS51032 | 18.162 | 41 | 104 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-18 | 41 | 110 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.8E-12 | 41 | 105 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-6 | 42 | 53 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.7E-12 | 139 | 190 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-18 | 139 | 200 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 6.21E-23 | 139 | 200 | No hit | No description |
PROSITE profile | PS51032 | 18.334 | 140 | 198 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.6E-26 | 140 | 204 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.3E-18 | 140 | 199 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-6 | 180 | 200 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MGKTSKQSLK NSANTSINPA TKVKRTRKSV PRDSPPQRSS IYRGVTRHRW TGRYEAHLWD 60 KNCWNESQNK KGRQGAYDDE EAAGHAYDLA ALKYWGQDTI LNFPLSTYEE EFKEMEGHSK 120 EEYIGSLRRK SSGFSRGVSK YRGVARHHHN GRWEARIGRV FGNKYLYLGT YATQEEAATA 180 YDMAAIEYRG LNAVTNFDLS RYSSKFKEML ERTSASDCPL TPPESDRDPP RRSFPDDIQT 240 YFDCQDSSSY TDGDDIIFGD LHSFASPIFH CELDG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.T081300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC210384 | 1e-120 | AC210384.1 Populus trichocarpa clone POP028-N07, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021609923.1 | 1e-150 | AP2-like ethylene-responsive transcription factor At1g16060 | ||||
Swissprot | Q94AN4 | 1e-113 | AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | A5B2I1 | 1e-149 | A5B2I1_VITVI; Uncharacterized protein | ||||
STRING | cassava4.1_021785m | 1e-152 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1300 | 34 | 101 | Representative plant | OGRP112 | 17 | 209 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79700.2 | 2e-99 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.T081300.1 |
Publications ? help Back to Top | |||
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