PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.T054900.1
Common NamePOPTR_0219s00220g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 123aa    MW: 13631 Da    PI: 10.8835
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.T054900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3491.1e-1511961093
                     HHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
               B3 10 vlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
                     + +s+ l++p+k++e+     g      ++ +  desg +W++k+++rkk+    vl+kGW+ Fv+ ++Lk+gD + ++l+++  ++++
  Potri.T054900.1 11 TDTSKTLSVPRKYLESLpsfkG---GHAVEFQAIDESGFVWTFKCSIRKKGHPkPVLSKGWRAFVRNKKLKVGDKIKLSLNQTAAATPF 96
                     4556679*******99997643...35678999************886665546************************99887666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.7142102IPR003340B3 DNA binding domain
SuperFamilySSF1019362.22E-15390IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.9E-84102IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.9E-17490IPR015300DNA-binding pseudobarrel domain
CDDcd100173.03E-18490No hitNo description
PfamPF023624.9E-131297IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MTTFSKILGK TDTSKTLSVP RKYLESLPSF KGGHAVEFQA IDESGFVWTF KCSIRKKGHP  60
KPVLSKGWRA FVRNKKLKVG DKIKLSLNQT AAATPFYRVQ AEKEVKIFGA IFGYSSIIAT  120
FP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15477RKKGHPKPVLSKGWRAFVRNKKLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.T054900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011010225.17e-78PREDICTED: B3 domain-containing transcription factor NGA4-like
TrEMBLU7DYN22e-83U7DYN2_POPTR; Uncharacterized protein
STRINGPOPTR_0219s00220.13e-84(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2060778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43950.11e-08auxin response factor 23