PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G43950.1 | ||||||||
Common Name | ARF23, F9C16.11 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | B3 | ||||||||
Protein Properties | Length: 222aa MW: 24821.2 Da PI: 4.8279 | ||||||||
Description | auxin response factor 23 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.4 | 5.5e-18 | 126 | 222 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f kvlt sd++++g +++p k+a e+ ++++ ++l+ d++g++W++k++yr +g t+GW+ F +++L +gD++vF + +++el+ AT1G43950.1 126 FTKVLTASDTSAQGEFSVPCKHAIEClppldMSQPIPAQELIAIDLHGNQWRFKHSYRVPRGD---TTGWNAFTTSKKLVVGDVIVFA--RGETGELR 218 89****************************9444445569*****************999999...78********************..4499999* PP EEEE CS B3 94 vkvf 97 v+++ AT1G43950.1 219 VGIR 222 9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.4E-27 | 117 | 222 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.16E-23 | 124 | 221 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.87E-19 | 125 | 222 | No hit | No description |
Pfam | PF02362 | 2.3E-15 | 126 | 222 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.6E-9 | 126 | 220 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.955 | 126 | 222 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MESGNVVNVQ SELSGIIDGS KSYMYEQLWK LCAGPLCDIP KLGEKVYYFP QGHIELVEAS 60 TREELNELQP NCDLPSKLQC RVIAIHLKVE NNSDETYVEI TLMPDTTQVV IPTENENQFR 120 PIVNSFTKVL TASDTSAQGE FSVPCKHAIE CLPPLDMSQP IPAQELIAID LHGNQWRFKH 180 SYRVPRGDTT GWNAFTTSKK LVVGDVIVFA RGETGELRVG IR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 6e-65 | 27 | 222 | 22 | 223 | Auxin response factor 1 |
4ldy_B | 6e-65 | 27 | 222 | 22 | 223 | Auxin response factor 1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 18401136 | 0.0 | ||||
Genevisible | 259457_at | 5e-99 | ||||
Expression Atlas | AT1G43950 | - | ||||
AtGenExpress | AT1G43950 | - | ||||
ATTED-II | AT1G43950 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G43950.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G43950 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493494 | 0.0 | AB493494.1 Arabidopsis thaliana At1g34310 mRNA for hypothetical protein, partial cds, clone: RAAt1g34310. | |||
GenBank | AY669792 | 0.0 | AY669792.1 Arabidopsis thaliana clone C105347 ARF12 (At1g34310) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_175062.1 | 1e-166 | auxin response factor 23 | ||||
Swissprot | Q9LP07 | 1e-167 | ARFW_ARATH; Putative auxin response factor 23 | ||||
TrEMBL | C0SUZ1 | 1e-138 | C0SUZ1_ARATH; Auxin response factor (Fragment) | ||||
STRING | AT1G43950.1 | 1e-166 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP526 | 15 | 78 |
Link Out ? help Back to Top | |
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Phytozome | AT1G43950.1 |
Entrez Gene | 840994 |
iHOP | AT1G43950 |
wikigenes | AT1G43950 |
Publications ? help Back to Top | |||
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