PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.T044100.2 | ||||||||
Common Name | POPTR_0017s09820g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | TCP | ||||||||
Protein Properties | Length: 322aa MW: 34166.9 Da PI: 9.4782 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 125.4 | 6.1e-39 | 81 | 165 | 2 | 86 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnss 86 a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tgt++++as+ + s++ s Potri.T044100.2 81 APKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALaA-AGGAISQQGAS 165 789******************************************************************88853.33333333222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.7E-31 | 86 | 173 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.016 | 87 | 141 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MDPKGSNSKN PHELPTFFTL THTHTSPSPS PHTPPQPHHQ QPQHLHNQNQ LQPNMGENKA 60 AEIKDFQIVV ADKEEQKKQL APKRSSNKDR HTKVEGRGRR IRMPALCAAR IFQLTRELGH 120 KSDGETIQWL LQQAEPSIIA ATGTGTIPAS ALAAAGGAIS QQGASLSAGL HQKIDDIGES 180 SSRRTSWAML GGNLGRPHQV TSAGLWPPVG GYGFQSSSNT TGPSTTNIVS EGGGGSSYLQ 240 KNGFSGFDMP GNNIGPMSLT SILGVGSQQL PGLELGLSQD GHIGVLSPQA LSQIYQQMGQ 300 ARVQQHQQQN PSKDDSQGSG Q* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.7516 | 0.0 | bud |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00005 | PBM | Transfer from 484486 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.T044100.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC209004 | 0.0 | AC209004.1 Populus trichocarpa clone POP042-E15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006373221.1 | 0.0 | transcription factor TCP20 | ||||
Refseq | XP_024448074.1 | 0.0 | transcription factor TCP20 | ||||
Refseq | XP_024448075.1 | 0.0 | transcription factor TCP20 | ||||
Swissprot | Q9LSD5 | 3e-81 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | B9N0Z2 | 0.0 | B9N0Z2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0017s09820.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 1e-75 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.T044100.2 |
Entrez Gene | 18107224 |