PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.T037100.2
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 314aa    MW: 35618.1 Da    PI: 5.6874
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.T037100.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.000425173323
                     ET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2  3 Cp..dCgksFsrksnLkrHirtH 23
                     C+   Cgk+F +   L++H   H
  Potri.T037100.2 51 CSfeGCGKTFIDAGALRKHSHIH 73
                     77779**************7766 PP
2zf-C2H222.43.1e-0778102123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      y+C+   Cgk Fs   nL++H++tH
  Potri.T037100.2  78 YVCHyeGCGKAFSLDFNLRSHMKTH 102
                      9***********************9 PP
3zf-C2H215.64.6e-05108132123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      + Cp   Cgk++ + + Lk+Hi +H
  Potri.T037100.2 108 HICPysECGKRYAHEYKLKNHIASH 132
                      68*********************96 PP
4zf-C2H213.30.00024171196123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                      y Cp   C k + + + Lk H+r+ H
  Potri.T037100.2 171 YICPyeGCEKDYIHEYKLKLHLRReH 196
                      89**********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.5E-144474IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00374973IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.7834978IPR007087Zinc finger, C2H2
SuperFamilySSF576679.46E-951102No hitNo description
PROSITE patternPS0002805173IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.6E-1475101IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.77878107IPR007087Zinc finger, C2H2
SMARTSM003557.2E-478102IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028080102IPR007087Zinc finger, C2H2
SuperFamilySSF576672.56E-988137No hitNo description
Gene3DG3DSA:3.30.160.605.8E-8102134IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.949108137IPR007087Zinc finger, C2H2
SMARTSM003550.035108132IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280110133IPR007087Zinc finger, C2H2
SuperFamilySSF576674.04E-5166194No hitNo description
Gene3DG3DSA:3.30.160.604.0E-9166193IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.559171201IPR007087Zinc finger, C2H2
SMARTSM003550.016171196IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280173196IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
RVPQDVVATG GKCSLFKWVA ENQLNVLKEK AKEPPAPEPE PEPTTEVLFL CSFEGCGKTF  60
IDAGALRKHS HIHGERQYVC HYEGCGKAFS LDFNLRSHMK THSQENYHIC PYSECGKRYA  120
HEYKLKNHIA SHHEKNPTPD VVRYATPPER ILKNPKPPSG VYGSASSDRP YICPYEGCEK  180
DYIHEYKLKL HLRREHPDHM ADENAENANS NADNEMDEAS DQDAYGGKRV NGKSQKHSRP  240
KPNLKTPPVK IRQRKGSSSS PATLNVVKKP WPVKDDTYEE DSEETEEEDH DNAEDGWRYG  300
GNEDDDEETE DED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C6e-20511928117PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.110750.0bud| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Rapidly induced following seed germination, especially in tender cotyledons. {ECO:0000269|PubMed:26961720}.
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers, to a lower extent in seedlings, stems and leaves, and, at low levels, in roots and senescent leaves. {ECO:0000269|PubMed:26961720}.
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.T037100.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1485070.0EF148507.1 Populus trichocarpa x Populus deltoides clone WS0131_N16 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024454063.10.0zinc finger transcription factor YY1 isoform X2
SwissprotQ2V3L31e-120YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLA0A2K1R9290.0A0A2K1R929_POPTR; Uncharacterized protein (Fragment)
STRINGPOPTR_0022s00900.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.11e-102C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]