PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.T024100.1 | ||||||||
Common Name | POPTR_0011s12810g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | DBB | ||||||||
Protein Properties | Length: 246aa MW: 26514.8 Da PI: 5.6719 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 24.9 | 4.3e-08 | 4 | 32 | 6 | 35 |
zf-B_box 6 CpeHeekelqlfCedCqqllCedClleeHk 35 C+++++ ++ fCe+++ lC dC ++ H+ Potri.T024100.1 4 CELCGSS-ARMFCESDEASLCWDCDEKVHS 32 *****99.*******************995 PP | |||||||
2 | zf-B_box | 25.8 | 2.1e-08 | 86 | 116 | 3 | 34 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeH 34 ++ C+++++ ++ +Ce++q lC dC ++ H Potri.T024100.1 86 MKGCELCGSS-ARMYCESDQASLCWDCDEKVH 116 567*****99.******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.058 | 1 | 45 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 4.5E-10 | 1 | 45 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.9E-6 | 4 | 32 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 9.59E-6 | 4 | 45 | No hit | No description |
PROSITE profile | PS50119 | 9.328 | 84 | 130 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 4.3E-13 | 84 | 130 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.1E-6 | 87 | 117 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 8.61E-6 | 89 | 130 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MKGCELCGSS ARMFCESDEA SLCWDCDEKV HSANFLVAKH CRTLLCQVCQ SPTPWKASVS 60 KFAPTVSICE SCFTIPNKTK ETEERMKGCE LCGSSARMYC ESDQASLCWD CDEKVHTANF 120 LVAKHCRTLL CQVCQSPTPW KASGSKFAPT VSVVPWSGPT ASSSPSPVPP VASSSSEEET 180 SCAGRNGFLK RMRESNVDLD SDDEIGCSSS HNIGGRILSN DGGNSLSSLR PWKQARTSVN 240 VEEDG* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.141 | 1e-159 | leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.T024100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC216449 | 0.0 | AC216449.1 Populus trichocarpa clone POP006-O09, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006377787.2 | 1e-108 | B-box zinc finger protein 24 | ||||
Refseq | XP_024467600.1 | 1e-108 | B-box zinc finger protein 24-like | ||||
TrEMBL | A0A3N7FF71 | 1e-106 | A0A3N7FF71_POPTR; Uncharacterized protein | ||||
TrEMBL | A0A3N7H929 | 1e-106 | A0A3N7H929_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0011s12810.1 | 1e-107 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF20676 | 3 | 4 | Representative plant | OGRP845 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 1e-14 | salt tolerance homolog2 |
Link Out ? help Back to Top | |
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Phytozome | Potri.T024100.1 |
Entrez Gene | 7460864 |