PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.019G123500.2
Common NamePOPTR_0019s14460g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 454aa    MW: 49768.2 Da    PI: 6.2763
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.019G123500.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.51e-31258315260
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         +DgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kk +ers  +++v+ei+Y+g+Hnh+k
  Potri.019G123500.2 258 EDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKILERSL-EGQVTEIVYKGSHNHPK 315
                         7****************************************.***************85 PP
2WRKY352.9e-11432453122
                         ---SS-EEEEEEE--TT-SS-E CS
                WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                         ldDgy+WrKYGqK+vkg+++pr
  Potri.019G123500.2 432 LDDGYRWRKYGQKVVKGNPNPR 453
                         59*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.6E-27244316IPR003657WRKY domain
PROSITE profilePS5081122.332252316IPR003657WRKY domain
SuperFamilySSF1182903.27E-24252316IPR003657WRKY domain
SMARTSM007747.5E-34257315IPR003657WRKY domain
PfamPF031065.3E-24258314IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.1E-13417453IPR003657WRKY domain
SuperFamilySSF1182903.14E-9424453IPR003657WRKY domain
PROSITE profilePS5081116.386427453IPR003657WRKY domain
PfamPF031069.5E-7433453IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MASSPGSLDT SANSHSEGSS NYFSFNTYSS SHYPFMTSSS LTDLLASSDE EPNNHITNNS  60
KLSDRIAERT GSGVPKFKSI PPPSLPLSPP PVSPSSYFAI PAGLSPAELL DSPVLLNPSN  120
ILPSPTTGTF PAQAFNWKSS YGNSLQNVKK EDKTFSDFSF QQPARPPTTS TAMFQSSNAT  180
IQPEQQQTWG FQESAKQGAF VSGKSSMVKM EYNSNSMQSF SPEIAAIQTN PQSNNGFQSD  240
YGNQQQQYQS VREQRRSEDG YNWRKYGQKQ VKGSENPRSY YKCTYPNCPT KKILERSLEG  300
QVTEIVYKGS HNHPKPQSTR RSSSSTTASN LGMIPAPNSN PNEIQEQSYV THGSGQMDSS  360
VATPENSSIS IGDDDFDSQR SRSGGGDDFD EDEPEAKRWK REGDNEGISA PGSKAVREPR  420
VVVQTTSDID ILDDGYRWRK YGQKVVKGNP NPR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-142593161674WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.019G123500.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774240.0GQ377424.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002326093.30.0LOW QUALITY PROTEIN: WRKY transcription factor WRKY24
TrEMBLA0A2K1WT450.0A0A2K1WT45_POPTR; Uncharacterized protein
STRINGPOPTR_0019s14460.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.12e-62WRKY DNA-binding protein 33