PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.019G053200.2 | ||||||||
Common Name | POPTR_0019s08030g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C3H | ||||||||
Protein Properties | Length: 446aa MW: 48459.8 Da PI: 8.5102 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.7 | 3e-11 | 54 | 80 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p Potri.019G053200.2 54 PGEPDCSYYIRTGLCRFGPTCRFNHPP 80 5789*********************97 PP | |||||||
2 | zf-CCCH | 38.8 | 1.5e-12 | 101 | 125 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ Potri.019G053200.2 101 QPECQYYLKTGTCKFGATCKFHHPR 125 799********************96 PP | |||||||
3 | zf-CCCH | 33.5 | 7.1e-11 | 149 | 171 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C +++rtG+Ck+G++CkF+H++ Potri.019G053200.2 149 ECAYYLRTGQCKFGSTCKFHHPQ 171 5********************97 PP | |||||||
4 | zf-CCCH | 37.9 | 3.1e-12 | 306 | 332 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ Potri.019G053200.2 306 PGQPECQFYMKTGDCKFGAVCRFHHPR 332 5789*********************96 PP | |||||||
5 | zf-CCCH | 40.2 | 5.4e-13 | 352 | 378 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF+H++ Potri.019G053200.2 352 PGEPLCIFYSRYGICKFGPSCKFHHPM 378 589**********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.3E-5 | 53 | 80 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.84 | 53 | 81 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.4E-8 | 55 | 80 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-5 | 58 | 81 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.0E-4 | 59 | 79 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.0E-6 | 98 | 125 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.159 | 98 | 126 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.4E-10 | 101 | 125 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-6 | 102 | 127 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.8E-5 | 104 | 125 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.7E-4 | 144 | 171 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-6 | 144 | 172 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.568 | 144 | 172 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.8E-9 | 149 | 171 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.0E-4 | 150 | 170 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.8E-6 | 305 | 332 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.596 | 305 | 333 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.6E-9 | 307 | 332 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.07E-5 | 309 | 335 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.9E-5 | 311 | 333 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.2E-7 | 351 | 378 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.784 | 351 | 379 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.5E-10 | 353 | 378 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.46E-6 | 354 | 378 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.4E-4 | 356 | 376 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0017148 | Biological Process | negative regulation of translation | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0048027 | Molecular Function | mRNA 5'-UTR binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 446 aa Download sequence Send to blast |
MDFDAGIPMS RGGGGLPAVT EETSLSPSLS EDAMWQMNLR SSETMEAGPY PERPGEPDCS 60 YYIRTGLCRF GPTCRFNHPP NRKLAIAAAR MKGEFPERIG QPECQYYLKT GTCKFGATCK 120 FHHPRDKAGV SGRVSLNILG YPLRLNEMEC AYYLRTGQCK FGSTCKFHHP QPANVMVPLR 180 GSPVYPTVNS PTTPGQQSYP GGLATNWSRA SFITSPRWQA PSNYTPLILP QGVVSVPGWN 240 AYSGQVGSVS SPESQQQTGN SQIYGTSRQN ESVNAGSQGT FSPYRSDSVP MGFYALQRES 300 VFPERPGQPE CQFYMKTGDC KFGAVCRFHH PRERLIPAPD CVLSAIGLPL RPGEPLCIFY 360 SRYGICKFGP SCKFHHPMGI FTYNLTASSS ADAPVRRLLG SSSGSAALTL SSEGLVEAGS 420 TKPRRLSLSE PRQMPPGDDN IDTGG* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.3371 | 0.0 | bud| catkin |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.019G053200.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC216470 | 0.0 | AC216470.1 Populus trichocarpa clone POP037-N11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002325901.3 | 0.0 | zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Swissprot | Q9SWF9 | 0.0 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | A0A2K1WQ17 | 0.0 | A0A2K1WQ17_POPTR; Uncharacterized protein | ||||
STRING | cassava4.1_007759m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5321 | 33 | 55 | Representative plant | OGRP1247 | 17 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 0.0 | zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Potri.019G053200.2 |
Entrez Gene | 7491104 |