PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.019G031600.2

Common Name

POPTR_0019s04710g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 368aa MW: 41770.4 Da PI: 6.6793

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.019G031600.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	29.5	2.2e-09	18	43	1	26
NAM 1 lppGfrFhPtdeelvveyLkkkvegk 26 lppGfrFhPtdee++++yL++k+ +k Potri.019G031600.2 18 LPPGFRFHPTDEEIITHYLTEKMGEK 43 79*******************99776 PP
2	NAM	110.2	2.4e-34	41	116	54	129
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +ekewyfF++rd+ky+tg r+nrat+sgyWkatgkdke+++ k++lvg+kktLvfykgrapkgek++Wvmheyrle Potri.019G031600.2 41 GEKEWYFFCQRDRKYPTGMRTNRATESGYWKATGKDKEIYKGKHSLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLE 116 689************************************9999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	40.68	1	140	IPR003441	NAC domain
SuperFamily	SSF101941	1.15E-50	14	140	IPR003441	NAC domain
Pfam	PF02365	4.1E-29	19	115	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence Send to blast
MTMEEAIVVN KGDDLIDLPP GFRFHPTDEE IITHYLTEKM GEKEWYFFCQ RDRKYPTGMR 60 TNRATESGYW KATGKDKEIY KGKHSLVGMK KTLVFYKGRA PKGEKSNWVM HEYRLEGKFS 120 YYSLPKVARD EWVVCRIFHK STGIKKTSIH DLLRVNSFGD DFLDYSSLPP FMDPLNYNSR 180 PSTSSFSGGD NNEFKEMATR SSDGNYFSNT SMLNNNQNFA QPPNTNYQAP NSSFHPQIPA 240 SNPLYTFQTS PNMPGYLHQG KSSSNSFQNF QNSIFSDNEH TLLRSLARNS YREASGLEKQ 300 CKVERFSSNQ SMVSLSQDTG LSTDVNTTAE ISSVVSKQEI GSHDKVFEDL EGPSAGPIAD 360 LDCLWDY*

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence Send to blast

MTMEEAIVVN KGDDLIDLPP GFRFHPTDEE IITHYLTEKM GEKEWYFFCQ RDRKYPTGMR  60
TNRATESGYW KATGKDKEIY KGKHSLVGMK KTLVFYKGRA PKGEKSNWVM HEYRLEGKFS  120
YYSLPKVARD EWVVCRIFHK STGIKKTSIH DLLRVNSFGD DFLDYSSLPP FMDPLNYNSR  180
PSTSSFSGGD NNEFKEMATR SSDGNYFSNT SMLNNNQNFA QPPNTNYQAP NSSFHPQIPA  240
SNPLYTFQTS PNMPGYLHQG KSSSNSFQNF QNSIFSDNEH TLLRSLARNS YREASGLEKQ  300
CKVERFSSNQ SMVSLSQDTG LSTDVNTTAE ISSVVSKQEI GSHDKVFEDL EGPSAGPIAD  360
LDCLWDY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-39	16	146	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-39	16	146	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-39	16	146	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-39	16	146	15	171	NO APICAL MERISTEM PROTEIN
3swm_A	4e-39	16	146	18	174	NAC domain-containing protein 19
3swm_B	4e-39	16	146	18	174	NAC domain-containing protein 19
3swm_C	4e-39	16	146	18	174	NAC domain-containing protein 19
3swm_D	4e-39	16	146	18	174	NAC domain-containing protein 19
3swp_A	4e-39	16	146	18	174	NAC domain-containing protein 19
3swp_B	4e-39	16	146	18	174	NAC domain-containing protein 19
3swp_C	4e-39	16	146	18	174	NAC domain-containing protein 19
3swp_D	4e-39	16	146	18	174	NAC domain-containing protein 19
4dul_A	3e-39	16	146	15	171	NAC domain-containing protein 19
4dul_B	3e-39	16	146	15	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00518	DAP	Transfer from AT5G18270	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.019G031600.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006371151.1	0.0	NAC domain-containing protein 87 isoform X1
Swissprot	Q9FK44	9e-90	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	U5FEC8	0.0	U5FEC8_POPTR; NAC family protein
STRING	POPTR_0019s04710.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.2	1e-88	Arabidopsis NAC domain containing protein 87

Link Out ? help Back to Top
Phytozome	Potri.019G031600.2
Entrez Gene	7469864

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]