PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.019G020900.5 | ||||||||
Common Name | POPTR_0019s03750g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 422aa MW: 46949.1 Da PI: 5.4925 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 107 | 1.1e-33 | 185 | 239 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r+rWtpeLHe+Fveav+qLGGse+AtPk +l+ m+v+gLt++hvkSHLQkYR+ Potri.019G020900.5 185 KSRMRWTPELHEAFVEAVNQLGGSERATPKGVLKQMNVEGLTIYHVKSHLQKYRT 239 68****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.489 | 182 | 242 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.48E-18 | 183 | 239 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.8E-31 | 184 | 241 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-24 | 185 | 239 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.7E-10 | 187 | 238 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.7E-23 | 270 | 317 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 422 aa Download sequence Send to blast |
MIRNPASQQA SPLSSGNGSV GHLVSSSSRF TNDTSVSAVS PQGKQSHNSP FISQSLRDGG 60 NFPPTHYSHS EGQSTAFINH SDDNKGLSWP IDPLQEFINF VENVPVQNGQ VESTAGVIAS 120 EDHAKRTDWQ EWADQLISVD DELEPNWSEI LNDVNMKDSK QKHQTAHSGE VCAVTNPLLA 180 APPTKSRMRW TPELHEAFVE AVNQLGGSER ATPKGVLKQM NVEGLTIYHV KSHLQKYRTA 240 RYKPESSEGT SEKKLSPVEE MKSLDLKTSM EISEALRLQM EVQKQLHEQL EIQRNLQLRI 300 EEQGRYLQEM FEKQKKMEGD RSKAPPPSQN DPSLLQSKLE QSPANDKLET SDLDCVKTRF 360 DICNASALLE ESSQSINRKQ KAPEDRNCQV VDKNEEKTSL APVKRPRTDE ATALSAEPAS 420 N* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 6e-31 | 185 | 243 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 6e-31 | 185 | 243 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 6e-31 | 185 | 243 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 6e-31 | 185 | 243 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 6e-31 | 185 | 243 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 6e-31 | 185 | 243 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 6e-31 | 185 | 243 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 6e-31 | 185 | 243 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoots and roots. {ECO:0000269|PubMed:20838596}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:23788639}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00532 | DAP | Transfer from AT5G29000 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.019G020900.5 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Not up-regulated by Pi starvation. {ECO:0000269|PubMed:26586833}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024447353.1 | 0.0 | protein PHR1-LIKE 1 isoform X4 | ||||
Swissprot | Q8GUN5 | 4e-98 | PHL1_ARATH; Protein PHR1-LIKE 1 | ||||
TrEMBL | A0A3N7GC88 | 0.0 | A0A3N7GC88_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0019s03750.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G29000.3 | 1e-101 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.019G020900.5 |
Entrez Gene | 7465946 |
Publications ? help Back to Top | |||
---|---|---|---|
|